PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G248300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 323aa    MW: 36030.6 Da    PI: 8.2048
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G248300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.8e-14251293547
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                         +r++r++kNRe+A rsR+RK+a++ eLe+k+  Le+eN++L+k
  Potri.010G248300.1 251 RRQKRMIKNRESAARSRARKQAYTNELENKISRLEEENERLRK 293
                         79***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-13242293No hitNo description
SMARTSM003382.2E-12247311IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.438249293IPR004827Basic-leucine zipper domain
CDDcd147077.89E-23251294No hitNo description
PfamPF001709.7E-12251293IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10251293No hitNo description
PROSITE patternPS000360254269IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGMQTKGSQG DGSSHYKQSQ LQPLARQNSM YSLTLDEVQN QLGDLGKPLS SMNLDELLKN  60
VWTVEATQTM GLEVEGTPFA NQTALQRQAS LSLTSDLSKK TVDEVWKDIQ QSKNDRGIKS  120
RERQPTFGEM TLEDFLVKAG VVDEGSMDKK DGGSIVGVDT NAAQQFQQQG QWLQYPPQPQ  180
YQQPQQSMMG VYMPGQSTLQ PLHMGAGSMM DVSYSENQVA LPPPLMGTLS DTQAPARKRG  240
VPDMIEKTVE RRQKRMIKNR ESAARSRARK QAYTNELENK ISRLEEENER LRKLRVGICC  300
HVSLSLSPNI SFAEQHQPHS SK*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G248300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103410.0AC210341.1 Populus trichocarpa clone POP085-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378844.20.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
RefseqXP_024465265.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES34e-80AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2K1YZU80.0A0A2K1YZU8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s25460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132034105
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.14e-58ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]