PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G240800.1
Common NamePOPTR_0010s24710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 236aa    MW: 26522.4 Da    PI: 6.9625
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G240800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-092365344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        rWT eEd+++ +a + ++ +   +W +Ia+++   +++ ++k+++
  Potri.010G240800.1 23 RWTREEDKIFEQALTIFPENlpdRWQSIANHIR--KSAWEVKEHY 65
                        9*******************************8..89999**998 PP
2Myb_DNA-binding43.95.3e-14131175347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E++l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Potri.010G240800.1 131 PWTEDEHKLFLVGLNKFGKGDWRSISRNVVITRTPTQVASHAQKY 175
                         8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.4E-82071IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-42268IPR009057Homeodomain-like
SuperFamilySSF466891.04E-122377IPR009057Homeodomain-like
PfamPF002494.3E-62365IPR001005SANT/Myb domain
CDDcd001673.11E-82365No hitNo description
PROSITE profilePS500906.7022369IPR017877Myb-like domain
PROSITE profilePS5129417.998124180IPR017930Myb domain
SuperFamilySSF466896.14E-17125181IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-17127179IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-10128174IPR009057Homeodomain-like
SMARTSM007171.7E-11128178IPR001005SANT/Myb domain
CDDcd001675.33E-10131176No hitNo description
PfamPF002498.1E-13131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MHQDFNFQTR CLTQPPHATA ATRWTREEDK IFEQALTIFP ENLPDRWQSI ANHIRKSAWE  60
VKEHYDILVH DVLAIDSGRV ELPTYRDDES VSWESSGGDD GGMVAAGAPP SGQICFGGKG  120
KQDTERKKGT PWTEDEHKLF LVGLNKFGKG DWRSISRNVV ITRTPTQVAS HAQKYFLRQN  180
SVKKERKRSS IHDITSVDNN TVGPSADDYW NSPPGPPANQ DGPPGLGYQN FRFQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1324861174RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G240800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316492.21e-178transcription factor SRM1
SwissprotQ9FNN63e-58SRM1_ARATH; Transcription factor SRM1
TrEMBLB9HVV51e-176B9HVV5_POPTR; MYB family protein
STRINGPOPTR_0010s24710.11e-177(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60683251
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-78MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]