PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G235000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 576aa    MW: 66590.5 Da    PI: 6.1913
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G235000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.74.2e-30125210187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+l+L+e+r+++++r++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Potri.010G235000.1 125 RWPRQETLTLLEIRSRLDSRFKEANQKGPLWDEVSRIMaEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 210
                         8*************************************999*****************************98..55667*******85 PP
2trihelix67.92.1e-21432517286
            trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt+ e+l  i++r++me+r+++ g ++++lWee+++ m++ g+ rs  +Ckekwe++n +   ++e++kkr++++ +t  yf+ le
  Potri.010G235000.1 432 WTEPEILSFIQLRTSMESRFQEsGYSNEGLWEEIAEEMASLGYDRSVDECKEKWESMNIYLNMTTESNKKRKDQDLRTNDYFQLLE 517
                         *********************84679********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.004118183IPR017877Myb-like domain
SMARTSM007170.4122185IPR001005SANT/Myb domain
CDDcd122038.58E-21124190No hitNo description
PfamPF138375.6E-21124211No hitNo description
SMARTSM007170.069349491IPR001005SANT/Myb domain
PROSITE profilePS500907.317432489IPR017877Myb-like domain
CDDcd122032.57E-23432496No hitNo description
PfamPF138377.6E-16432518No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSEHHHQYGL PDLRQLVAGR AHFQGTQQGN EPFFVQSRNL VPQTHHFESI MVGHEAMLPS  60
GLVKLGGRHH DHYCTNATNI TTNNTITSAT IGTSSSAGAG TLYGVEMENA TAAGWIGNDG  120
GNNSRWPRQE TLTLLEIRSR LDSRFKEANQ KGPLWDEVSR IMAEEHGYQR SGKKCREKFE  180
NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGEPSNQAP ASETHFANNT LLYQTPLSNT  240
INQESQETFQ ENKHSESLSF SNTSEFETSS SENNDDDLSA IAYNMMNRST EKQKGVNESQ  300
SLAGPKKSWR TKVEDFVDSQ MRKLMEKQDA WMEKMLKTIE DREYERMCRE EEWTKQELAR  360
FDREHEFWAK ERAWIESRDS ALMEALKKHA EKGPELSSSV EHIAVATQRH NNNQDSTSAK  420
KIQKDKFNNI IWTEPEILSF IQLRTSMESR FQESGYSNEG LWEEIAEEMA SLGYDRSVDE  480
CKEKWESMNI YLNMTTESNK KRKDQDLRTN DYFQLLESYN GMNSSPSNSY LGTQVNDNSC  540
FQVQINEGDQ QQHLWNTNKF DLKLNKEKNQ QVWHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G235000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840630.0AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBankAC2144190.0AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316512.30.0trihelix transcription factor PTL
TrEMBLA0A2K1YZ630.0A0A2K1YZ63_POPTR; Uncharacterized protein
STRINGPOPTR_0008s02580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Representative plantOGRP8402716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-110Trihelix family protein