PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G233500.1 | ||||||||
Common Name | POPTR_0010s23970g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 473aa MW: 50892.9 Da PI: 8.3115 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.6 | 6.7e-18 | 84 | 168 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea++e+ ++l+rg+l++ +Weev+++++erg ++s +qCk+k++nl+kryk + ++ ++ s s++ +f+++e Potri.010G233500.1 84 EWSDTAISCLLEAYTEKFNQLNRGNLRGRDWEEVAEAVSERGGsnnKKSVEQCKNKIDNLKKRYKVELQRISG--S--GSSWHWFKHIE 168 5*************************************8887645578*****************98887776..3..446999*9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.4E-23 | 82 | 168 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 4.9E-70 | 229 | 465 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 7.07E-56 | 232 | 465 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.927 | 232 | 466 | IPR015963 | Uridylate kinase, bacteria |
CDD | cd04254 | 3.74E-114 | 235 | 466 | No hit | No description |
Pfam | PF00696 | 3.8E-23 | 236 | 445 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0046939 | Biological Process | nucleotide phosphorylation | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MSTDDFPLLD APPPHPTTRH PDAASVTTTG DYYYSDHDKS SATPSSKRNH QNHYYNNNNK 60 RSKSNSNTEL ESSDYRDYRK DREEWSDTAI SCLLEAYTEK FNQLNRGNLR GRDWEEVAEA 120 VSERGGSNNK KSVEQCKNKI DNLKKRYKVE LQRISGSGSS WHWFKHIEVI MGNACNGKSS 180 GGGAAAAAGG DSEGGGGGSC GNANVVVKQV KRYTSGSAAF ANSLKTKPVT NLKWRRVVFK 240 ISGSALAGNC QNIDPKVAMQ IAQEVATASR VGLEIAIVLG GRNFFCGESW ISATGLERPT 300 ACQIGMMATV MNSVLLQSAL EKHGVQARVQ SAFAMPELAE PYSRQRAIRH LEKGRVVIFG 360 GVGAGAGNPL FTTDTAAALR ASEINADALL KGTIVNGVYD SHAGSSNIIL DHISFRDVVS 420 RGATSMDMMA ITYCEENGIP VVVFNLLEPG NISRALCGDQ VGTLIDQAGR IS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3nwy_A | 1e-62 | 234 | 465 | 50 | 279 | Uridylate kinase |
3nwy_B | 1e-62 | 234 | 465 | 50 | 279 | Uridylate kinase |
3nwy_C | 1e-62 | 234 | 465 | 50 | 279 | Uridylate kinase |
3nwy_D | 1e-62 | 234 | 465 | 50 | 279 | Uridylate kinase |
3nwy_E | 1e-62 | 234 | 465 | 50 | 279 | Uridylate kinase |
3nwy_F | 1e-62 | 234 | 465 | 50 | 279 | Uridylate kinase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G233500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024465256.1 | 0.0 | uncharacterized protein LOC7468468 | ||||
Swissprot | Q3AV98 | 2e-74 | PYRH_SYNS9; Uridylate kinase | ||||
TrEMBL | A0A2K1YZ33 | 0.0 | A0A2K1YZ33_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s23970.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4062 | 32 | 52 | Representative plant | OGRP6161 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 1e-149 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G233500.1 |
Entrez Gene | 7468468 |