PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G229700.1
Common NamePOPTR_0010s23630g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 441aa    MW: 49238.5 Da    PI: 6.608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G229700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-51391661128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         l+pGfrFhPtdeelv +yLk+kv++k++++ ++i+evdiyk ePwdL   +++k++++ewyfFs+ dkky +g r nrat +gyWkatgkd
  Potri.010G229700.1  39 LAPGFRFHPTDEELVIYYLKRKVSNKPFRF-NAISEVDIYKNEPWDLAdkSRLKSRDQEWYFFSPLDKKYGNGARMNRATGKGYWKATGKD 128
                         579**************************9.89**************75348899999********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +e+ + + +l  +kktLvf++grap g +t+Wvmheyrl
  Potri.010G229700.1 129 REIRR-ECQLLAMKKTLVFHSGRAPGGLRTNWVMHEYRL 166
                         ****9.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-6028191IPR003441NAC domain
PROSITE profilePS5100557.33439190IPR003441NAC domain
PfamPF023657.7E-2741166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGPETSSQEQ QLRLALTTPA PPASAPAKTT PVSTKTTALA PGFRFHPTDE ELVIYYLKRK  60
VSNKPFRFNA ISEVDIYKNE PWDLADKSRL KSRDQEWYFF SPLDKKYGNG ARMNRATGKG  120
YWKATGKDRE IRRECQLLAM KKTLVFHSGR APGGLRTNWV MHEYRLIDEE LERTGAMQID  180
SYVLCRVFHK NNIGPPTGNR YAPFIEEEWD DRGAALIPGE DAADEVVVTY DTGGEMHRTE  240
QDSHSINKSP LGITEVPGDS QNALPVCKTE SVEDCPPLCV LNTEAPFPLL QYKRRKHNNE  300
TGSNRSNGSE NSTRTSQDPC SSTTTTAATT SAEMMMATTS ATTTAISALL EFSLMEPLEP  360
KENPRVPPPA LDAASLDSSM SPSCRKFIND LQSEIRKISV ERETLKLEMM SAHAMINILQ  420
SRVDFLNKEN EDLKRSVHAK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-533819219170NAC domain-containing protein 19
3swm_B8e-533819219170NAC domain-containing protein 19
3swm_C8e-533819219170NAC domain-containing protein 19
3swm_D8e-533819219170NAC domain-containing protein 19
3swp_A8e-533819219170NAC domain-containing protein 19
3swp_B8e-533819219170NAC domain-containing protein 19
3swp_C8e-533819219170NAC domain-containing protein 19
3swp_D8e-533819219170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.32250.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G229700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453940.0EF145394.1 Populus trichocarpa clone WS01124_C05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315336.10.0NAC domain containing protein 50
SwissprotQ9SQX91e-152NAC50_ARATH; NAC domain containing protein 50
TrEMBLA9PB020.0A9PB02_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Representative plantOGRP1087158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-145NAC domain containing protein 50
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]
  2. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]