PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G229400.2
Common NamePOPTR_0010s23610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 291aa    MW: 32050.3 Da    PI: 7.6146
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G229400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065122144123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Potri.010G229400.2 122 YECKTCNRTFPSFQALGGHRASH 144
                         99**********99999998887 PP
2zf-C2H212.70.00039189211123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg  F++   L  H+r+H
  Potri.010G229400.2 189 HECSVCGAEFTSGQALGGHMRRH 211
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-7121144No hitNo description
PfamPF139122.6E-13121146IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.637122149IPR007087Zinc finger, C2H2
SMARTSM003550.052122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576672.69E-7184211No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4187213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.284189213IPR007087Zinc finger, C2H2
SMARTSM003550.012189211IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-13189213IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEASEEVAAN VVKGKRTKRL RVQSPIFPYG LTANSSSGDG GTSWSPTSSV NEFQDSTEEE  60
EDMANCLILL AKGHSRDFPT QQQHRHQDYD SRGGADTTKF NSRKFLETAN STGSGKVGYY  120
VYECKTCNRT FPSFQALGGH RASHKKPKAT HNDERKKNLS PSSDEELDGH YKNVSSLCTF  180
SNHNKGKIHE CSVCGAEFTS GQALGGHMRR HRGPLLSSTT TLSLTPLAIE SEEPKKARNA  240
LSLDLDLNLP APDDEKFAFA SKQQQHQQQQ QQQQNTPLVF SSPALVDCHY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G229400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466014.10.0zinc finger protein ZAT5
TrEMBLA0A2K1YYY30.0A0A2K1YYY3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23610.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-55C2H2 family protein