PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G229400.1 | ||||||||
Common Name | POPTR_0010s23610g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 302aa MW: 33233.6 Da PI: 7.6146 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00069 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Potri.010G229400.1 122 YECKTCNRTFPSFQALGGHRASH 144 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00041 | 200 | 222 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H Potri.010G229400.1 200 HECSVCGAEFTSGQALGGHMRRH 222 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.7E-13 | 121 | 146 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.06E-7 | 121 | 144 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.06E-7 | 195 | 222 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 198 | 224 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.4E-13 | 200 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.284 | 200 | 224 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 200 | 222 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 202 | 222 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEASEEVAAN VVKGKRTKRL RVQSPIFPYG LTANSSSGDG GTSWSPTSSV NEFQDSTEEE 60 EDMANCLILL AKGHSRDFPT QQQHRHQDYD SRGGADTTKF NSRKFLETAN STGSGKVGYY 120 VYECKTCNRT FPSFQALGGH RASHKKPKAT HNDERKKNLS PSSDEELDGH YKNVSSLCLQ 180 LSDNNANRGT FSNHNKGKIH ECSVCGAEFT SGQALGGHMR RHRGPLLSST TTLSLTPLAI 240 ESEEPKKARN ALSLDLDLNL PAPDDEKFAF ASKQQQHQQQ QQQQQNTPLV FSSPALVDCH 300 Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G229400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466014.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A2K1YYY3 | 0.0 | A0A2K1YYY3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s23610.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 | Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 2e-54 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G229400.1 |
Entrez Gene | 7468448 |