PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G224700.1
Common NamePOPTR_0010s23160g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 1379aa    MW: 153626 Da    PI: 6.6847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G224700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005712631288123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                          +kC+   C +sF +k +L+ H r+ +
  Potri.010G224700.1 1263 HKCNleGCRMSFETKTELQLHKRNrC 1288
                          79********************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-141555IPR003349JmjN domain
PROSITE profilePS5118313.6891657IPR003349JmjN domain
PfamPF023751.3E-141750IPR003349JmjN domain
SMARTSM005586.1E-46287456IPR003347JmjC domain
SuperFamilySSF511976.04E-26287453No hitNo description
PROSITE profilePS5118433.688290456IPR003347JmjC domain
PfamPF023731.4E-35320439IPR003347JmjC domain
Gene3DG3DSA:3.30.160.608.5E-412591285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551012631285IPR015880Zinc finger, C2H2-like
SMARTSM003550.08412861310IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.00912861315IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-512871314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.48E-612871323No hitNo description
PROSITE patternPS00028012881310IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-913151340IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001813161340IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.88413161345IPR007087Zinc finger, C2H2
PROSITE patternPS00028013181340IPR007087Zinc finger, C2H2
SuperFamilySSF576672.81E-1013261368No hitNo description
Gene3DG3DSA:3.30.160.601.1E-1013411369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.513461372IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.59613461377IPR007087Zinc finger, C2H2
PROSITE patternPS00028013481372IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1379 aa     Download sequence    Send to blast
MGNVEIPEWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKRYV  60
FSNLNKALSK CPELGDDVDL SNGVLRDGGN DGENRAVFTT RQQELGQSAK KAKGVDKENP  120
QSGVHQQVWQ SGEVYTLEQF ESKSKAFARS LLGMIKEVNP LAVEALFWKA ASEKPIYVEY  180
ANDVPGSGFG EPEGHFRYFQ RRRRKRASYQ SYRRSREIPV CRENDMDGVK NSHNDDVTVK  240
NEPSMCLKMT PRSSMASATP SAEDSLKSSK QKSVAASNDM EGTAGWKLSN SPWNLQVIAR  300
SPGSLTRFMP DDIPGVTSPM VYIGMLFSWF AWHVEDHELH SMNFLHIGSP KTWYAVPGDY  360
VFAFEEVIRT KAYGGNIDRL AALSLLGEKT TLLSPEAIIS SGIPCCRLVQ NPGEFVVTFP  420
RAYHVGFSHG FNCGEAANFG TPQWLKVAKE AAVRRAAMNY LPMLSHQQLL YLLTMSFVSR  480
VPRSLLPGPR SSRLRDRQRE ERELSVKKAF LEDMLKENDV LSAFLEKNST CHVVIWNPDL  540
LPCASKESQL LSITSTITTT SNENASHVHS DLNSNSNEND LFKEMSLYME TLNDLYMEDD  600
LSCDFQVDSG TLACVACGIL GFPFMSVVQP SERAFIELTP GDYLLAQEEP GVTRSDNVQP  660
SSNPDISVKG SIPDDHAPVS DLSVSLKDLP APTGWNTSRK FLRPRIFCLE HGVQIEELLQ  720
SKGGANMLII CHSDYQKIKA HAFAIAEEIE NPFNYNEVPL EAASQENLNL INLAIDDEDH  780
HECGEDWTSK LGINLRYCVK IRKNSPSKKV QHALALGGLF SDRSLSSDFL NIKWQSRRSR  840
SRIKFNQPVN CKPCKIMETN KDELLGNKSD GLTDKKEKKL IHYTRRKYKV KIDYSTNGLQ  900
RCSRRCLAEE VSGTSGDDPD KHAEQTTVIY PCNIGITGSG SAAFGFSPIE DSEMLHEVQV  960
LEAASGLTLN SAPSQIAGSI LTATMAVESV AGQIEDQLLE ESNTERNICN VKASGSCEIE  1020
HEINASGGTS ERQDFCTAKC CSPFDTAANE RFEMQIEDQI MGNVNIMSET CDLVSEGQQR  1080
ILYDDDDASM HEVSDLANSA SLHVSHLPVA QMANVVVENS SINNEVSPPV TLDNEVQREI  1140
ETKSRTNGDQ CSSKSVVKCN EVCSSQEIES IESTVVDFRS NAGKGRKRKG EVEQPTENKL  1200
NSNGFIRSPC EGLRPRAGKD ATCKSEVDVG KSAEENPVTK RSRKPSDASV PRPKRKEITK  1260
RSHKCNLEGC RMSFETKTEL QLHKRNRCTY DGCGKKFRSH KYAIVHQRVH EDDRPLKCPW  1320
KGCSMSFKWA WARIEHIRVH TGEKPYLCKV EGCGLSFRFV SDFSRHRRKT GHYSNTPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-56266470133346Transcription factor jumonji (Jmj) family protein
6ip4_A3e-56266470133346Arabidopsis JMJ13
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}.
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G224700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378772.20.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A3N7FNR90.0A0A3N7FNR9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Representative plantOGRP75061114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]