PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G223300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 447aa    MW: 49067.9 Da    PI: 6.323
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G223300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17350383134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Potri.010G223300.1 350 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 383
                         99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-16344394IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.609344380IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15348407No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14348381IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.99E-14349396No hitNo description
PROSITE patternPS003440350375IPR000679Zinc finger, GATA-type
PfamPF003203.3E-15350383IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MKEEAQLPYS ALSFPSSIAT NTISTTHPPL PPCFKTQTHI THSPLLSSPH FTPTALSTSL  60
YKEFESTNFQ NSNNQEPPSL PPQGKKKFER SEEKMIGQTN TSSGFMDEID CGSFFDHIDD  120
LLDFPSDDVD ASLPDCTTTN NHASCFIDND DNSFPGIWSS QSDSLPGSAS DLSAELSVPY  180
EDIVQLEWLS NFVEDSFSGG SLTMKKEESA SVDKKDSTPH HQFQTSSPVS VLESSSDCSG  240
EKNAPRSPEI VASGKCGRAR SKRPRPAAFT PRPAMQLVSP TSSITEVPQQ FVSPRVPSDS  300
ESFAESRLVI KIPEHVDPEH KKKKKIKFIV PSGTVEMNQN SQPQQAVRKC MHCEITKTPQ  360
WRAGPMGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPSL HSNSHKKVVE MRAKAGEKIT  420
TSRPATMMVN SPEFIPNESN PAMDYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261265KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.82240.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G223300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0106880.0LC010688.1 Populus nigra PniGATA8a mRNA for GATA type zinc finger domain, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316371.30.0GATA transcription factor 8
TrEMBLA0A2K1YYK80.0A0A2K1YYK8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-42GATA family protein