PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G223200.1 | ||||||||
Common Name | POPTR_0010s23000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 707aa MW: 77657.7 Da PI: 7.6578 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.7 | 5.2e-24 | 152 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF Potri.010G223200.1 152 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL- 239 89****************************986555555..8999*********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++ l+v+++r+ Potri.010G223200.1 240 -RAENGDLCVGIRRA 253 .4488999****997 PP | |||||||
2 | Auxin_resp | 115.4 | 5.1e-38 | 304 | 387 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fe vY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ Potri.010G223200.1 304 AASLAANGQPFEAVYYPRASTPEFCVKASAVRSAIQIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 387 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-38 | 144 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-30 | 145 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.13E-22 | 151 | 252 | No hit | No description |
SMART | SM01019 | 9.4E-23 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-22 | 152 | 253 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.38 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.6E-33 | 304 | 387 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.17 | 620 | 700 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MFEAKLRDCS SQILQIPKLQ SGPMIREFAV MNSQKEKMRV AEKCLDSQLW HACAGSMVQM 60 PAVNSKVFYF PQGHAEHAQG SVEFGHFQIP ALIPCKVSAI KYMADPETDE VYAKIRLIPL 120 NNSDLMLGHG CGEDNDDRLH SGNESQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR 180 LDYTAEPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR 240 AENGDLCVGI RRAKRGIGGN ECSSGWNSFA GYSGFFREDE SKLMRRNGNG DMKGKVKAES 300 VIEAASLAAN GQPFEAVYYP RASTPEFCVK ASAVRSAIQI QWCPGMRFKM AFETEDSSRI 360 SWFMGTISSV QVADPIRWPN SPWRLLQVAW DEPDLLHNVK RVSPWLVELV SNMPAIHLSP 420 FSPPRKKLRL PQPPDFPLLG QIPMPSFTGN PLRSNSPLCC VSDNIPAGIQ GARHAQFGLS 480 SSDLHFNKLQ AGLFPVDFQR LDRAAPPSRI SNSNFVGNTQ NSESISCLLT MGNSSQSMKG 540 SDTKTPHILL FGQLIVTDQQ SSQSCSGDTN ANSSSDGHPG KAISDGSGSA SQQNGPLENS 600 SGGRCPWYKD YQKTDPGLET GHCKVFMESE DVGRTLDLSV LGSYEELHRK LVNMFGIESS 660 EMLSNVLYRN AAGATKHAGD EPFSEFLKTA RRLTILSDAS SDNVGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-79 | 31 | 408 | 37 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G223200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316370.3 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2K1YYK2 | 0.0 | A0A2K1YYK2_POPTR; Auxin response factor | ||||
TrEMBL | A0A385JIK6 | 0.0 | A0A385JIK6_POPTO; Auxin response factor | ||||
STRING | POPTR_0010s23000.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G223200.1 |
Entrez Gene | 7468418 |
Publications ? help Back to Top | |||
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