PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G220000.4
Common NamePOPTR_0010s22670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 1722aa    MW: 188528 Da    PI: 5.9653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G220000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-07803844346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +WT +E e++ +  + +G++ +++Ia+ +  +++  +c+++++k
  Potri.010G220000.4 803 PWTSDEKEIFMHKLATFGKD-FRKIASFLD-HKSTADCVEFYYK 844
                         8*****************99.*********.***********98 PP
2Myb_DNA-binding31.15.3e-1010121052345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                           WT eE  ++++av  +G++ ++ I++ +  +Rt+ qck ++ 
  Potri.010G220000.4 1012 DWTDEEKSIFIQAVSSYGKD-FAMISQVVR-TRTRDQCKVFFS 1052
                          5*****************99.*********.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-13787847IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-4795845IPR009057Homeodomain-like
PROSITE profilePS5129315.284799850IPR017884SANT domain
SMARTSM007173.7E-7800848IPR001005SANT/Myb domain
PROSITE profilePS5129312.49810081059IPR017884SANT domain
SMARTSM007176.9E-910091057IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-1110101059IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-710121053IPR009057Homeodomain-like
PfamPF002493.4E-810121052IPR001005SANT/Myb domain
CDDcd001672.48E-710131051No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1722 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHE RSESTSSSFG GGSTPRWREF PFSSANNYGS PRDFNRWGPH  60
DFRRPPGHGK QGGWHMLAEE SGHVLSPYRL SDKMLEDENC RPFSRGDGRY GRNNRENRGY  120
VSQRDWRGGH SWEMINGSPN MPGRQHDVNN DQRSVDEMLM YPPSHPAHSD FVNSWDQHQL  180
KDQDDNNKMG GVVGSGTGQR GDREIPLDWR PLKWTRSGSL SSRGSGFSHS SSSKSLGGVD  240
SNEGKTELQP KNATPVQSPS VDVAARVTSV ALSEEISSRK KARLGWGEGL AKYEKKKVEG  300
PDASENKDGA AVSASNMESI HFQTSNLADK SPRVMGFSDC ASPATPSSVA CSSSPGLEEK  360
TFLKSTNADN IASNLCGSPS VGSQSHIEGL SFNLEKMDVS SIANLGSSLA ELLQSDDPSS  420
MDSGFVRSTA MNKVLVWKSD ISKALELTES EIDSLENELK SMKFEYGSRC PWPAASSPLF  480
VSDVKPCSVQ GVASNSVPRP SPLQVASRGD GIVEKVSLCN GGLEVHGDVK DDDIDSPGTA  540
TSKLVEPVCL VRIDSSTVAL ENDFDGIQSA RMDLKGPVPR ADDEETGVFA CKDDVISSGD  600
VISETNGEDN LCSLILASNK ESASGASEVF NKLFPSDQCK FDFSCVTNGS SWQSGDLVVE  660
KIAKKKRLLR FKETAVTLKF KAFQHLWKEE MRLPSLRKYP AKSQKKWEPS LRTTHIGYQK  720
HRSSIRARFS SPAGNLSLVP TTEILNFTSK LLSDSQVKPY RNALKMPALI LDKKEKMGSR  780
FISSNGLVED PYAVEKERAM INPWTSDEKE IFMHKLATFG KDFRKIASFL DHKSTADCVE  840
FYYKNHKSDC FEKTKKSKQT KSSTNYLMAS STKWNRELNA ASLDILGVAS RIAADADHAM  900
NSQQLCSGRI FSRGYRNSKI TEGDDGILER SSSFDVLGNE RETVAADVLG SLSSEAMGSC  960
ITTSVDLMEG YREQKCQKVD SVAKAPLISD VMENFDEETC SDESCGEMDP TDWTDEEKSI  1020
FIQAVSSYGK DFAMISQVVR TRTRDQCKVF FSKARKCLGL DLMHPGPRKS RTPVSDNANG  1080
GGSDTEDACA METGSAICSD KLDSKIDEDL PSSIMNTEHD ESDAEEMIGL HEDLNGTEGN  1140
NACGILDKND SRVVDEMVSD PSEAGQSADL AFNVDSKFVN TVHQSEPVQA QKMLIASANA  1200
ESERDQVADK VVSVVESLSV VGAVDVSTSN ASTAVELKGV AEVSGNGLQN GFTEQELFLP  1260
ENSLGSPSGL MQDSTSNASH HPVHMDSCSE FSCSLENMHQ VSVQLESVEK PPVISLPQEN  1320
NLALTNSILQ DSAVIQFEKR HKQDTLQESS RDKQGKISVS GDDYFQHLSD HPLLNHNESS  1380
QIPRGYSLQI PTKKEMNGVI SGRLLSGAQS LPNSEKNVTS QSEAQECYLQ KCSSLKAQHS  1440
VPELPFISQR RGRGSDHLRD HSRRSSDVEK PCRNGDVKLF GKILSNPLQK QNSSARENGE  1500
KEAQHLKPTS KSSTFKFTGH HPTEGNMTLS KCDPNNQPGL ENVPMRSYGF WDGNRIQTGF  1560
PSMPDSATLL VKYPAAFSNY HVSSSKMPQQ TLQAAVKSNE CNLNGISVFP SREITGSNGV  1620
VDYQMYRSHD STGVPSFTVD MKQREVILAE MQRLNGQQTR GMAGVNVVGR GGILVGGACT  1680
GVSDPVAAIK RHYAKADQYG GQSGIVFREE ESWRGKGDIG R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G220000.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316354.20.0uncharacterized protein LOC7468404 isoform X1
RefseqXP_024466716.10.0uncharacterized protein LOC7468404 isoform X1
TrEMBLB9HU460.0B9HU46_POPTR; Uncharacterized protein
STRINGPOPTR_0010s22670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein