PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G220000.2
Common NamePOPTR_0010s22670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 1647aa    MW: 179760 Da    PI: 5.6183
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G220000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07728769346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +WT +E e++ +  + +G++ +++Ia+ +  +++  +c+++++k
  Potri.010G220000.2 728 PWTSDEKEIFMHKLATFGKD-FRKIASFLD-HKSTADCVEFYYK 769
                         8*****************99.*********.***********98 PP
2Myb_DNA-binding31.25e-10937977345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          WT eE  ++++av  +G++ ++ I++ +  +Rt+ qck ++ 
  Potri.010G220000.2 937 DWTDEEKSIFIQAVSSYGKD-FAMISQVVR-TRTRDQCKVFFS 977
                         5*****************99.*********.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-13712772IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-4720770IPR009057Homeodomain-like
PROSITE profilePS5129315.284724775IPR017884SANT domain
SMARTSM007173.7E-7725773IPR001005SANT/Myb domain
PROSITE profilePS5129312.498933984IPR017884SANT domain
SMARTSM007176.9E-9934982IPR001005SANT/Myb domain
SuperFamilySSF466895.15E-11935984IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-7937978IPR009057Homeodomain-like
PfamPF002493.2E-8937977IPR001005SANT/Myb domain
CDDcd001672.36E-7938976No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1647 aa     Download sequence    Send to blast
MLAEESGHVL SPYRLSDKML EDENCRPFSR GDGRYGRNNR ENRGYVSQRD WRGGHSWEMI  60
NGSPNMPGRQ HDVNNDQRSV DEMLMYPPSH PAHSDFVNSW DQHQLKDQDD NNKMGGVVGS  120
GTGQRGDREI PLDWRPLKWT RSGSLSSRGS GFSHSSSSKS LGGVDSNEGK TELQPKNATP  180
VQSPSVDVAA RVTSVALSEE ISSRKKARLG WGEGLAKYEK KKVEGPDASE NKDGAAVSAS  240
NMESIHFQTS NLADKSPRVM GFSDCASPAT PSSVACSSSP GLEEKTFLKS TNADNIASNL  300
CGSPSVGSQS HIEGLSFNLE KMDVSSIANL GSSLAELLQS DDPSSMDSGF VRSTAMNKVL  360
VWKSDISKAL ELTESEIDSL ENELKSMKFE YGSRCPWPAA SSPLFVSDVK PCSVQGVASN  420
SVPRPSPLQV ASRGDGIVEK VSLCNGGLEV HGDVKDDDID SPGTATSKLV EPVCLVRIDS  480
STVALENDFD GIQSARMDLK GPVPRADDEE TGVFACKDDV ISSGDVISET NGEDNLCSLI  540
LASNKESASG ASEVFNKLFP SDQCKFDFSC VTNGSSWQSG DLVVEKIAKK KRLLRFKETA  600
VTLKFKAFQH LWKEEMRLPS LRKYPAKSQK KWEPSLRTTH IGYQKHRSSI RARFSSPAGN  660
LSLVPTTEIL NFTSKLLSDS QVKPYRNALK MPALILDKKE KMGSRFISSN GLVEDPYAVE  720
KERAMINPWT SDEKEIFMHK LATFGKDFRK IASFLDHKST ADCVEFYYKN HKSDCFEKTK  780
KSKQTKSSTN YLMASSTKWN RELNAASLDI LGVASRIAAD ADHAMNSQQL CSGRIFSRGY  840
RNSKITEGDD GILERSSSFD VLGNERETVA ADVLGSLSSE AMGSCITTSV DLMEGYREQK  900
CQKVDSVAKA PLISDVMENF DEETCSDESC GEMDPTDWTD EEKSIFIQAV SSYGKDFAMI  960
SQVVRTRTRD QCKVFFSKAR KCLGLDLMHP GPRKSRTPVS DNANGGGSDT EDACAMETGS  1020
AICSDKLDSK IDEDLPSSIM NTEHDESDAE EMIGLHEDLN GTEGNNACGI LDKNDSRVVD  1080
EMVSDPSEAG QSADLAFNVD SKFVNTVHQS EPVQAQKMLI ASANAESERD QVADKVVSVV  1140
ESLSVVGAVD VSTSNASTAV ELKGVAEVSG NGLQNGFTEQ ELFLPENSLG SPSGLMQDST  1200
SNASHHPVHM DSCSEFSCSL ENMHQVSVQL ESVEKPPVIS LPQENNLALT NSILQDSAVI  1260
QFEKRHKQDT LQESSRDKQG KISVSGDDYF QHLSDHPLLN HNESSQIPRG YSLQIPTKKE  1320
MNGVISGRLL SGAQSLPNSE KNVTSQSEAQ ECYLQKCSSL KAQHSVPELP FISQRRGRGS  1380
DHLRDHSRRS SDVEKPCRNG DVKLFGKILS NPLQKQNSSA RENGEKEAQH LKPTSKSSTF  1440
KFTGHHPTEG NMTLSKCDPN NQPGLENVPM RSYGFWDGNR IQTGFPSMPD SATLLVKYPA  1500
AFSNYHVSSS KMPQQTLQAA VKSNECNLNG ISVFPSREIT GSNGVVDYQM YRSHDSTGVP  1560
SFTVDMKQRE VILAEMQRLN GQQTRGMAGV NVVGRGGILV GGACTGVSDP VAAIKRHYAK  1620
ADQYGGQSGI VFREEESWRG KGDIGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G220000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466718.10.0uncharacterized protein LOC7468404 isoform X3
TrEMBLA0A2K1YYB10.0A0A2K1YYB1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s22670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein