PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G216200.5
Common NamePOPTR_0010s22320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 489aa    MW: 53663.1 Da    PI: 7.2757
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G216200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11e-13167217155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfsl.gkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++l g f+ta  Aa+a+++a+ k++g
  Potri.010G216200.5 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLaGGFDTAHAAARAYDRAAIKFRG 217
                         78*******************......5588887699*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-13167226IPR016177DNA-binding domain
PfamPF008471.5E-6167217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-15168226IPR001471AP2/ERF domain
SMARTSM003806.5E-29168231IPR001471AP2/ERF domain
PROSITE profilePS5103215.62168225IPR001471AP2/ERF domain
CDDcd000184.02E-13260305No hitNo description
SuperFamilySSF541711.77E-6260304IPR016177DNA-binding domain
SMARTSM003805.2E-12261309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MLDLNLGISS SDSCCEDNNK NNMMVIVDVE NHQEEEEAAS RTQQMEDSAT SNSSITNTTE  60
DENSSNNSNS AFIFDILKKD GNFTNTSAIN ASKETSRNCD FTTQQLFPES TGLELNFQPG  120
LAVASAARPQ WLKLSQMGSS PEAEPENVQQ KQQQARKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLAGGFDT AHAAARAYDR AAIKFRGVDA DINFNSSDYE EDMKQMKNLS  240
KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDKAA LEFNGREAVT  300
NFEPSVYKGD VISDPNNGGS GHNLDLSLGI SQPSNDPKGN DSVGDSHCRY GGCEIPRKER  360
QVVEGSTAAA HMGLQTLHGS PMASKNLPAW SGIYPGLLSS YEERTTEKKV EAVSSPRFSS  420
WPWLINGSNN VVATMSQLSV AASSGFSSTI TASSATLPFN QQNHFASNLR LAASTTSSPN  480
PSLYSYKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G216200.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466943.10.0ethylene-responsive transcription factor RAP2-7 isoform X3
TrEMBLA0A2K1YY450.0A0A2K1YY45_POPTR; Uncharacterized protein
STRINGPOPTR_0010s22320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.13e-82related to AP2.7