PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G216200.3
Common NamePOPTR_0010s22320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 488aa    MW: 53592 Da    PI: 7.2757
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G216200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17167216155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Potri.010G216200.3 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16167225IPR016177DNA-binding domain
PfamPF008475.6E-9167216IPR001471AP2/ERF domain
PROSITE profilePS5103217.794168224IPR001471AP2/ERF domain
SMARTSM003804.1E-32168230IPR001471AP2/ERF domain
CDDcd000181.24E-11168226No hitNo description
Gene3DG3DSA:3.30.730.103.3E-17168225IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-6259303IPR016177DNA-binding domain
CDDcd000184.00E-13259304No hitNo description
SMARTSM003805.2E-12260308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MLDLNLGISS SDSCCEDNNK NNMMVIVDVE NHQEEEEAAS RTQQMEDSAT SNSSITNTTE  60
DENSSNNSNS AFIFDILKKD GNFTNTSAIN ASKETSRNCD FTTQQLFPES TGLELNFQPG  120
LAVASAARPQ WLKLSQMGSS PEAEPENVQQ KQQQARKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNSSDYEE DMKQMKNLSK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKAYDKAAL EFNGREAVTN  300
FEPSVYKGDV ISDPNNGGSG HNLDLSLGIS QPSNDPKGND SVGDSHCRYG GCEIPRKERQ  360
VVEGSTAAAH MGLQTLHGSP MASKNLPAWS GIYPGLLSSY EERTTEKKVE AVSSPRFSSW  420
PWLINGSNNV VATMSQLSVA ASSGFSSTIT ASSATLPFNQ QNHFASNLRL AASTTSSPNP  480
SLYSYKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G216200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466943.10.0ethylene-responsive transcription factor RAP2-7 isoform X3
TrEMBLB9HU090.0B9HU09_POPTR; Uncharacterized protein
STRINGPOPTR_0010s22320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.14e-84related to AP2.7