PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G216200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 256aa MW: 29051.1 Da PI: 8.2277 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 167 | 200 | 1 | 39 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgta 39 s+y+GV++++++grW+++I+d + k+++lg f+ta Potri.010G216200.2 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTA 200 78*******************......55*********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.12E-6 | 167 | 201 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-5 | 168 | 201 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.111 | 168 | 201 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-4 | 168 | 226 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLDLNLGISS SDSCCEDNNK NNMMVIVDVE NHQEEEEAAS RTQQMEDSAT SNSSITNTTE 60 DENSSNNSNS AFIFDILKKD GNFTNTSAIN ASKETSRNCD FTTQQLFPES TGLELNFQPG 120 LAVASAARPQ WLKLSQMGSS PEAEPENVQQ KQQQARKSRR GPRSRSSQYR GVTFYRRTGR 180 WESHIWDCGK QVYLGGFDTA HHIWACKPFM VHQWHQRTFQ HGLAYTLVYY QATRKGLQRR 240 RLKLFLHRDS QAGRG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G216200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466942.1 | 1e-144 | floral homeotic protein APETALA 2 isoform X2 | ||||
TrEMBL | A0A2I4KL10 | 1e-143 | A0A2I4KL10_POPTR; AP2 family protein | ||||
TrEMBL | B9HU09 | 1e-143 | B9HU09_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s22320.1 | 1e-144 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 5e-17 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G216200.2 |