PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.010G205400.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 357aa MW: 37530.7 Da PI: 9.5101

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.010G205400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	73	132	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Potri.010G205400.1 73 EMALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 132 6689*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-31	56	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	75	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MVFSSIPVYL DPPNWQQQHN NQPPAGAGNE NPQLPPPSGP PTGGGDGGGT TAGSIRPGSM 60 TDRARLAKIP LPEMALKCPR CESTNTKFCY FNNYSLTQPR HFCKTCRRYW TRGGALRNVP 120 VGGGCRRNKR SKGSGRSKSP VKAGSSSSGG LSSNGGTTDI TGNMTTPPPL LPIFPPLHHL 180 GDYNSPDIGL NFGGILPSVG ATAGGGGGVE FQMENSTSSN SVGGSVLSSG LVEQWRLQQV 240 QHQVQQYPFL SNLEPSSGLY SFEGGGIGPS NYAGQIRSRP LDSTGVSQLA SVKMEGNQGL 300 NLSRNFLGIS GNDQYWGGNN AWTDLPGSLK LSVINSEKKE VFQVSTNYPN SASSNP*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MVFSSIPVYL DPPNWQQQHN NQPPAGAGNE NPQLPPPSGP PTGGGDGGGT TAGSIRPGSM  60
TDRARLAKIP LPEMALKCPR CESTNTKFCY FNNYSLTQPR HFCKTCRRYW TRGGALRNVP  120
VGGGCRRNKR SKGSGRSKSP VKAGSSSSGG LSSNGGTTDI TGNMTTPPPL LPIFPPLHHL  180
GDYNSPDIGL NFGGILPSVG ATAGGGGGVE FQMENSTSSN SVGGSVLSSG LVEQWRLQQV  240
QHQVQQYPFL SNLEPSSGLY SFEGGGIGPS NYAGQIRSRP LDSTGVSQLA SVKMEGNQGL  300
NLSRNFLGIS GNDQYWGGNN AWTDLPGSLK LSVINSEKKE VFQVSTNYPN SASSNP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	49	SGPPTGGGDGGGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.010G205400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024465485.1	0.0	dof zinc finger protein DOF3.6 isoform X1
TrEMBL	A0A2K1YXI1	0.0	A0A2K1YXI1_POPTR; Uncharacterized protein
STRING	POPTR_0010s21240.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-39	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Potri.010G205400.1