PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G202300.1 | ||||||||
Common Name | POPTR_0010s20980g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 486aa MW: 53962.7 Da PI: 5.2063 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 221.1 | 5.5e-68 | 266 | 482 | 1 | 219 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cAeav++++ + a lL++++++a p+gd+mqRla +f+ +L+arla+s++++ykal +++ts +++l a+++ ++P+ Potri.010G202300.1 266 LRTLLTLCAEAVAADNRRSAIDLLKQIRQNAPPTGDAMQRLANVFADGLEARLAGSGTQIYKALISRPTS---AADVLEAYHMVLTACPFR 353 5789*****************************************************************9...89999************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+s++ N +I + +e+++rvHi+Df+i++G+QWp+L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rL+++A++++vpfefn+ Potri.010G202300.1 354 KLSNFFSNITIKKIAENATRVHIVDFGIMYGFQWPSLIQRLSSRPGGPPKLRITGIDLPNPGfrPAERVEETGRRLENYANTFKVPFEFNA 444 *************************************************************9***************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219 +a+ ++++++e+L+++++E+l+Vn+ ++l +llde++ Potri.010G202300.1 445 -IAQMWDTVQIEDLKIDRNEVLVVNSLFRLRNLLDETGG 482 .7********************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.837 | 240 | 485 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-65 | 266 | 482 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MSQEVDSHED FDFSDVVLKY ISQMLMEEEM EDKTCMFQES SAALLAAEQS LYELIGNYTS 60 STSRSSGSNL VDLGEYKFSR RASQFASRSS YSSGNSTVIV DGYVDSPVGP NMVAEIFRES 120 ESVMQFKKGF EEARKFIPNG DLFTDLEING LFLRDPKEDA KDVLGMTEEK NENENHTDGL 180 RRKKSPHLEE LALEGFRSNK QSAVYSESTA SPADFDMVLL NCGRDESSIR AALHNGESKI 240 VQQNGQAKGG KARGKRQGGK RNVVDLRTLL TLCAEAVAAD NRRSAIDLLK QIRQNAPPTG 300 DAMQRLANVF ADGLEARLAG SGTQIYKALI SRPTSAADVL EAYHMVLTAC PFRKLSNFFS 360 NITIKKIAEN ATRVHIVDFG IMYGFQWPSL IQRLSSRPGG PPKLRITGID LPNPGFRPAE 420 RVEETGRRLE NYANTFKVPF EFNAIAQMWD TVQIEDLKID RNEVLVVNSL FRLRNLLDET 480 GGGES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-36 | 273 | 481 | 26 | 229 | Protein SCARECROW |
5b3h_A | 3e-36 | 273 | 481 | 25 | 228 | Protein SCARECROW |
5b3h_D | 3e-36 | 273 | 481 | 25 | 228 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1092 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G202300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463071.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | Q9XE58 | 1e-123 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2K1YXA6 | 0.0 | A0A2K1YXA6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s20980.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-109 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G202300.1 |
Entrez Gene | 7489602 |
Publications ? help Back to Top | |||
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