PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G200400.1 | ||||||||
Common Name | POPTR_0010s20800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24206.3 Da PI: 4.9638 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l Potri.010G200400.1 7 SCGACKFLRRKCTSECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAAITISYEALARMRDPIYGCVAHIFALQQQVASL 97 6************************978*************************************************************** PP DUF260 91 kaelallkee 100 ++e++ l+++ Potri.010G200400.1 98 QEEIEILENQ 107 *****99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.347 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-37 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN 60 RGDAAITISY EALARMRDPI YGCVAHIFAL QQQVASLQEE IEILENQMAS LTVGVAGFGS 120 SPTISNPNCE MLFSFQQDAM NTQYYQNPQS AQLNHSGYTT GNQTFDGQMN VPLTPLYGWE 180 DQDIFCNSHP RPLERLLEEV DKEIFTYCSW PDSGNIII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 3 | 117 | 7 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 3 | 117 | 7 | 120 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G200400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316271.2 | 1e-166 | LOB domain-containing protein 29 | ||||
Swissprot | Q9LHS8 | 2e-57 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | B9HT79 | 1e-164 | B9HT79_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s20800.1 | 1e-165 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 3e-48 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G200400.1 |
Entrez Gene | 7490379 |
Publications ? help Back to Top | |||
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