PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G199800.1 | ||||||||
Common Name | POPTR_0010s20740g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 291aa MW: 32331.2 Da PI: 8.3027 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00013 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Potri.010G199800.1 54 YSCSFCSREFRSAQALGGHMNVH 76 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.94E-6 | 51 | 81 | No hit | No description |
PROSITE profile | PS50157 | 11.489 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0058 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.1E-6 | 54 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MEQAQYWLWM KRKQLLKSQL PASMKSISGS WEEKAFAEDS SGHLGGCIWP PRSYSCSFCS 60 REFRSAQALG GHMNVHRRDR ARLKQSLSPH NYVFQHQNHI QSSLKPLGSH FPSDQVCTLD 120 NYDLDPKLSV SRATNIASTL SNQENLSEHA FVSPPSSSFV QEQHKGYPYL HDNLSGSDHS 180 LSARLHSKPE AERNQGEVKV TCLNHDKFVA TDLFMDLGSV INSHGLLSPG SCGDEAISCK 240 RPRTNVSVLS LLVKPRPNDR YILQSEATGP TSSSKEGIDL ELRLGETPKK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-12 | 49 | 76 | 2 | 29 | superman protein |
2l1o_A | 2e-12 | 49 | 76 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G199800.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316269.1 | 0.0 | zinc finger protein 10 | ||||
TrEMBL | B9HT74 | 0.0 | B9HT74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s20740.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 2e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G199800.1 |
Entrez Gene | 7458126 |