PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G195000.1
Common NamePOPTR_0010s20220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 416aa    MW: 44766.7 Da    PI: 5.6619
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G195000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-1756101147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Potri.010G195000.1  56 KGPWSPEEDAVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 101
                         79******************************.***********985 PP
2Myb_DNA-binding60.43.9e-19108152147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++T eEd +++ a++++G++ W++Iar ++ gRt++++k++w++ 
  Potri.010G195000.1 108 RKPFTDEEDRIIIAAHAKHGNK-WAAIARLLP-GRTDNSIKNHWNST 152
                         789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.23151102IPR017930Myb domain
SuperFamilySSF466891.73E-3153149IPR009057Homeodomain-like
SMARTSM007173.2E-1555104IPR001005SANT/Myb domain
PfamPF002497.7E-1756101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2657109IPR009057Homeodomain-like
CDDcd001671.45E-1458100No hitNo description
PROSITE profilePS5129426.252103157IPR017930Myb domain
SMARTSM007172.1E-18107155IPR001005SANT/Myb domain
PfamPF002491.1E-16108152IPR001005SANT/Myb domain
CDDcd001674.30E-14110153No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24110156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MQNQTENNND AMRLTEGERE NQMDSPTGGD GGDGGAESGE LGGGSGGSGG TNGKVKGPWS  60
PEEDAVLSQL VSKFGARNWS LIARGIPGRS GKSCRLRWCN QLDPCLKRKP FTDEEDRIII  120
AAHAKHGNKW AAIARLLPGR TDNSIKNHWN STLRRRWADL VRLKPGTSDV MEDGSNERTR  180
ASSEETLSVC DVNSSLPLEV RDVTMDDQPS QHEDKAQTDN IPQTNEVNFA SEPNGNPTLP  240
RPVARVSAFK VYNPLNDPKL GSGLTRTIPT HGCLVQTPKP DSGSCKILED VHCEPIVPSR  300
CGYGCCATPS GGHPPSTLLG PEFVEYEEPP PFSSQELISI ATDLNNIAWI KSGLENSSTG  360
IPSNAASYRM SQGTSVGSQM GMSEQNLRNG HMHFEEGRNK LMSTMAGTIS TQMPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-39551563104C-Myb DNA-Binding Domain
1msf_C4e-39551563104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G195000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2784400.0GU278440.1 Populus balsamifera isolate FBK13 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784420.0GU278442.1 Populus balsamifera isolate INU03 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784530.0GU278453.1 Populus balsamifera isolate LOV02 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784550.0GU278455.1 Populus balsamifera isolate RNA13 haplotype B myb family transcription factor 109 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315183.30.0transcription factor MYB1
TrEMBLA0A2K1YWX00.0A0A2K1YWX0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-98myb domain protein 109