PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G187900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 679aa    MW: 73977.6 Da    PI: 7.1845
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G187900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07266286526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ GtC+ Gd C +aHg
  Potri.010G187900.1 266 PCPEFRK-GTCQKGDYCEYAHG 286
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.73E-1445154IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-1554178IPR020683Ankyrin repeat-containing domain
SMARTSM002486.1E-476106IPR002110Ankyrin repeat
PROSITE profilePS5029714.55776151IPR020683Ankyrin repeat-containing domain
PfamPF127962.7E-876145IPR020683Ankyrin repeat-containing domain
CDDcd002041.21E-1378174No hitNo description
SMARTSM002480.018111143IPR002110Ankyrin repeat
PROSITE profilePS5008810.259111146IPR002110Ankyrin repeat
SMARTSM003561.9E-4261287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474261288IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-5266286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4266288IPR000571Zinc finger, CCCH-type
SMARTSM0035637296319IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869296320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MCTGSKSDLP PLNPIMEDKS YSQKGSLLYK CSVLLELSAS DDLAGFKIEV EQKGLDIDEA  60
SYWYGRRIGL KKMGFEERTP LMIAAMFGSA HVLKYIIETG KVNVNRVCGS DRVTALHCAV  120
AGGADSSVGV VKLLLDASAD PNSVDGNGNK PGDLFAPSSK WLCNSRKKMI ELLLKGESLS  180
EDEEEKLIIT PQLAREGIEK KEYPLDVTLP DINNGIYGTD EFRMYSFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGTCQKGDY CEYAHGVFES WLHPAQYRTR  300
LCKDETGCAR KVCFFAHKPE ELRPVYAATG SAMPSPRSTS SAVDMATLSP LALGSSSLSL  360
PGTSTPPMSP LAAASSSPKS GGLWQNKVSL TPPALQLPGS RLKTAFCARD LDLEMELLGL  420
ESYSSHLQQQ QQQLRDEMTG LSSPSHWSSR MADLKPTTLD DVFGSLDPSL MSPMQGVSLK  480
ASTQTQLQSP NGIQIRQNMN QLRSSYPAAN LSSSPARNPT SYGFDTSAAV AAAVMNSRSS  540
AFAKRSQSFI DRGAVPNRFG LTAAANSASM MSSNLSDWNS PNGKLDWGIQ GDELNKLKKS  600
ASFGFRSNNN PATTAASLTA SHVDEPDVSW VNSLVKDVPP AGSTFFGAEK QYSRREGVPD  660
SLPPWMEQMY REQEQMVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.125450.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G187900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466053.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2K1YWF00.0A0A2K1YWF0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein