PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G183700.2
Common NameDREB1, POPTR_0010s19100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 273aa    MW: 30137.3 Da    PI: 6.3659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G183700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1878128155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta+eAa a+++a+++++g
  Potri.010G183700.2  78 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYEAALAYDEAARAMYG 128
                         56*****999.**********8...2.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.24E-3178138No hitNo description
PfamPF008474.3E-1378128IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2079137IPR016177DNA-binding domain
PROSITE profilePS5103221.32579136IPR001471AP2/ERF domain
SMARTSM003801.2E-3479142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3079137IPR001471AP2/ERF domain
PRINTSPR003671.2E-98091IPR001471AP2/ERF domain
PRINTSPR003671.2E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGTLDQYSKA TSMPTDPTKK RKRVINKSVA ETLKKWKEYN EYLDSQGDGG NKPVRKVPAK  60
GSKKGCMKGK GGPENSVCNY RGVRQRTWGK WVAEIREPNR GPRLWLGTFP TAYEAALAYD  120
EAARAMYGPY ARLNVPDVLN STSSSKDNFS SATPSCYSPA ASSADSATTS THSEVCVYED  180
PKQNVYSQAE VLAHHISSQQ HIEDGSQGVE NSTLRDEQKS QSENPLWTPS ENSLWTNDWH  240
NYSMDEIFSF DELLGGIDAG MMGAEGYFNL GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1779136260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-1779141568ATERF1
3gcc_A7e-1779141568ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G183700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2078630.0GU207863.1 Populus hopeiensis DREB2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465135.10.0dehydration-responsive element-binding protein 2A isoform X2
TrEMBLA0A2K1YW840.0A0A2K1YW84_POPTR; Uncharacterized protein
STRINGPOPTR_0010s19100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-35DRE-binding protein 2A