PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G183700.1
Common NameDREB1, POPTR_0010s19100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 284aa    MW: 31241.5 Da    PI: 6.052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G183700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1878128155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta+eAa a+++a+++++g
  Potri.010G183700.1  78 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYEAALAYDEAARAMYG 128
                         56*****999.**********8...2.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.70E-3178138No hitNo description
PfamPF008474.5E-1378128IPR001471AP2/ERF domain
PROSITE profilePS5103221.32579136IPR001471AP2/ERF domain
SMARTSM003801.2E-3479142IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2079137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-3079137IPR001471AP2/ERF domain
PRINTSPR003671.3E-98091IPR001471AP2/ERF domain
PRINTSPR003671.3E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGTLDQYSKA TSMPTDPTKK RKRVINKSVA ETLKKWKEYN EYLDSQGDGG NKPVRKVPAK  60
GSKKGCMKGK GGPENSVCNY RGVRQRTWGK WVAEIREPNR GPRLWLGTFP TAYEAALAYD  120
EAARAMYGPY ARLNVPDVLN STSSSKDNFS SATPSCYSPA ASSADSATTS THSEVCVYED  180
PKQNVYSQAE VCGKDVSSQA EVLAHHISSQ QHIEDGSQGV ENSTLRDEQK SQSENPLWTP  240
SENSLWTNDW HNYSMDEIFS FDELLGGIDA GMMGAEGYFN LGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1779136260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-1779141568ATERF1
3gcc_A6e-1779141568ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G183700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514550.0EF151455.1 Populus trichocarpa DRE-binding protein 1 (DREB1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315132.10.0dehydration-responsive element-binding protein 2A isoform X1
RefseqXP_024465134.10.0dehydration-responsive element-binding protein 2A isoform X1
SwissprotQ8LFR27e-56DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA9PL420.0A9PL42_POPTR; DRE-binding protein 1
STRINGPOPTR_0010s19100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.27e-35DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]