PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G176300.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 343aa    MW: 37258.8 Da    PI: 8.2751
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G176300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-113258127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C++f++t  CkyG +CkF+H++
  Potri.010G176300.2 32 PGEPDCPYFLKTQRCKYGLNCKFNHPK 58
                        5789*********************96 PP
2zf-CCCH39.87.6e-1380104327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tG Ck+G++CkF+H++
  Potri.010G176300.2  80 EPPCAFYMKTGKCKFGASCKFHHPK 104
                         79*********************96 PP
3zf-CCCH39.21.2e-12158182327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C+f+++tG CkyG++C+++H++
  Potri.010G176300.2 158 EVDCPFYLKTGSCKYGATCRYNHPE 182
                         689********************96 PP
4zf-CCCH42.11.4e-13239263226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C+f+++tG+Ck+G+rCkF+H+
  Potri.010G176300.2 239 GQTECDFYMKTGECKFGERCKFHHP 263
                         6789********************8 PP
5zf-CCCH39.21.2e-12295316627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C+++++tG CkyG++CkF H+p
  Potri.010G176300.2 295 CPYYMKTGACKYGATCKFDHPP 316
                         ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.5E-63158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7653159IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-93358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-63661IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-53759IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-677104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.28677105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-680105IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-1080104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-682103IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925155183IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10158182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5159183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5161182IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-7237264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582237265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-7237266IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-11239263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5243263IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338289317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6293316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5295314IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10295316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MFLPPLNRLF LALNALLKVP LIATSETFPE RPGEPDCPYF LKTQRCKYGL NCKFNHPKEK  60
LSLGDSENSS VSALPERPSE PPCAFYMKTG KCKFGASCKF HHPKDIQIPL SGLGNDNGVQ  120
TDSVVKNEGI TGDVDVIYSP VTPALHHNSK GLPIRLGEVD CPFYLKTGSC KYGATCRYNH  180
PERTAINPPA AAIGHPIVAP SLANLNFGVF NPAASIYQTI DPRLSMLGVG PTFYPQRPGQ  240
TECDFYMKTG ECKFGERCKF HHPIDRSAPT EKQIQQQTVK LTLAGLPRRE GAVHCPYYMK  300
TGACKYGATC KFDHPPPGEV MAVATSLDAA VLGAEVGTSQ AQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G176300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2320648e-50CU232064.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315096.20.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-140C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2K1YVV10.0A0A2K1YVV1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18390.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-142floral homeotic protein (HUA1)