PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G176300.1
Common NamePOPTR_0010s18390g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 533aa    MW: 57917.4 Da    PI: 8.0761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G176300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.2e-11171195226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C +++ t tCk+Gd+CkF H+
  Potri.010G176300.1 171 GEKDCAHYMLTRTCKFGDTCKFDHP 195
                         7889********************9 PP
2zf-CCCH352.5e-11222248127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++f++t  CkyG +CkF+H++
  Potri.010G176300.1 222 PGEPDCPYFLKTQRCKYGLNCKFNHPK 248
                         5789*********************96 PP
3zf-CCCH391.3e-12270294327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tG Ck+G++CkF+H++
  Potri.010G176300.1 270 EPPCAFYMKTGKCKFGASCKFHHPK 294
                         79*********************96 PP
4zf-CCCH38.52e-12348372327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C+f+++tG CkyG++C+++H++
  Potri.010G176300.1 348 EVDCPFYLKTGSCKYGATCRYNHPE 372
                         689********************96 PP
5zf-CCCH41.32.5e-13429453226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C+f+++tG+Ck+G+rCkF+H+
  Potri.010G176300.1 429 GQTECDFYMKTGECKFGERCKFHHP 453
                         6789********************8 PP
6zf-CCCH38.42e-12485506627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C+++++tG CkyG++CkF H+p
  Potri.010G176300.1 485 CPYYMKTGACKYGATCKFDHPP 506
                         ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.887169197IPR000571Zinc finger, CCCH-type
SMARTSM003560.001169196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5170196IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8171195IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6221248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765221249IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9223248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5226251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-5227249IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286267295IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10270294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6271295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-6272293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925345373IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6345372IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10348372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5349373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4351372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6427456IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-7427454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582427455IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-11429453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5433453IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6479506IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338479507IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5483506IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5485504IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10485506IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEKRKLGVTS GFRQTANQLY GYGATATTTS ASRSLTDSYL TDSVLTRYSG TGSDPLSSDS  60
SKYSVSSSMY LKQSDTALRY SVDRGIASAS AAATSPHFSS WTPPPGVDVP PAVESLVPGL  120
KRTPEVLYHP TLLGAHSTIG QSEDWYSTNS LAKRVRFETT SHFPIYPQRP GEKDCAHYML  180
TRTCKFGDTC KFDHPVWVPE GGIPDWKEVP LIATSETFPE RPGEPDCPYF LKTQRCKYGL  240
NCKFNHPKEK LSLGDSENSS VSALPERPSE PPCAFYMKTG KCKFGASCKF HHPKDIQIPL  300
SGLGNDNGVQ TDSVVKNEGI TGDVDVIYSP VTPALHHNSK GLPIRLGEVD CPFYLKTGSC  360
KYGATCRYNH PERTAINPPA AAIGHPIVAP SLANLNFGVF NPAASIYQTI DPRLSMLGVG  420
PTFYPQRPGQ TECDFYMKTG ECKFGERCKF HHPIDRSAPT EKQIQQQTVK LTLAGLPRRE  480
GAVHCPYYMK TGACKYGATC KFDHPPPGEV MAVATSLDAA VLGAEVGTSQ AQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G176300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315096.20.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A3N7FSU10.0A0A3N7FSU1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)