PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G174600.1
Common NamePOPTR_0010s18180g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 300aa    MW: 34023.2 Da    PI: 5.9984
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G174600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.51.8e-5561331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelvv+yL +k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf s+rdkky++g+r+nratk+gyWkatgkd
  Potri.010G174600.1   6 LPPGFRFHPTDEELVVYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDLEWYFLSPRDKKYPNGSRTNRATKAGYWKATGKD 95 
                         79****************************.99**************96434555777********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v s +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  Potri.010G174600.1  96 RPVNS-QKRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                         *****.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-644157IPR003441NAC domain
PROSITE profilePS5100559.9096157IPR003441NAC domain
PfamPF023656.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV VYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DLEWYFLSPR DKKYPNGSRT NRATKAGYWK ATGKDRPVNS QKRPVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLIDSLCGA APSSLKDSYA LCRVFKKTIH IPKKKEEKNN GNEEKDAAWV  180
SEEQLLGDDT SGIESSKGRE AEDENFNNDY CKFPSETSSS DVTQGTPIET AIADDLQAPF  240
PSDEANSSAS LYSMGVDFSS NLIQDMQMPN CSSLHYQFPF PPLELENLRI SHRLVSPRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-58115712165NO APICAL MERISTEM PROTEIN
1ut4_B6e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_A6e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_B6e-58115712165NO APICAL MERISTEM PROTEIN
3swm_A7e-58115715168NAC domain-containing protein 19
3swm_B7e-58115715168NAC domain-containing protein 19
3swm_C7e-58115715168NAC domain-containing protein 19
3swm_D7e-58115715168NAC domain-containing protein 19
3swp_A7e-58115715168NAC domain-containing protein 19
3swp_B7e-58115715168NAC domain-containing protein 19
3swp_C7e-58115715168NAC domain-containing protein 19
3swp_D7e-58115715168NAC domain-containing protein 19
4dul_A6e-58115712165NAC domain-containing protein 19
4dul_B6e-58115712165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G174600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1878610.0AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014226.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ9FFI54e-89NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A2K1YVR40.0A0A2K1YVR4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.12e-96NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]