PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G174600.1 | ||||||||
Common Name | POPTR_0010s18180g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 34023.2 Da PI: 5.9984 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.5 | 1.8e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelvv+yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf s+rdkky++g+r+nratk+gyWkatgkd Potri.010G174600.1 6 LPPGFRFHPTDEELVVYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDLEWYFLSPRDKKYPNGSRTNRATKAGYWKATGKD 95 79****************************.99**************96434555777********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s +++ vg+kktLv+y+grap+g +t+Wvmheyrl Potri.010G174600.1 96 RPVNS-QKRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 *****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-64 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.909 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV VYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DLEWYFLSPR DKKYPNGSRT NRATKAGYWK ATGKDRPVNS QKRPVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLIDSLCGA APSSLKDSYA LCRVFKKTIH IPKKKEEKNN GNEEKDAAWV 180 SEEQLLGDDT SGIESSKGRE AEDENFNNDY CKFPSETSSS DVTQGTPIET AIADDLQAPF 240 PSDEANSSAS LYSMGVDFSS NLIQDMQMPN CSSLHYQFPF PPLELENLRI SHRLVSPRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-58 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-58 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-58 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-58 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-58 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-58 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-58 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-58 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-58 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-58 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-58 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-58 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-58 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-58 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G174600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC187861 | 0.0 | AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014226.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | Q9FFI5 | 4e-89 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A2K1YVR4 | 0.0 | A0A2K1YVR4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s18180.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 2e-96 | NAC domain containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G174600.1 |
Entrez Gene | 7464564 |
Publications ? help Back to Top | |||
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