PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G174500.1
Common NamePOPTR_0010s18170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 308aa    MW: 34703.2 Da    PI: 8.1084
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G174500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.7e-191360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+lv++++ +G g+W+++++  g++R++k+c++rw++yl
  Potri.010G174500.1 13 RGLWSPEEDEKLVKYIATHGHGSWSSVPKFAGLKRCGKSCRLRWLNYL 60
                        788*******************************************97 PP
2Myb_DNA-binding47.93.2e-1566109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +++ E++ ++da++ lG++ W+ I+++++ gRt++++k++w++
  Potri.010G174500.1  66 RGCFSALEEQVIIDAHRILGNR-WSQISKHLP-GRTDNEVKNFWNS 109
                         7999******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-25563IPR009057Homeodomain-like
PROSITE profilePS5129424.396864IPR017930Myb domain
SuperFamilySSF466895.24E-2910107IPR009057Homeodomain-like
SMARTSM007171.2E-141262IPR001005SANT/Myb domain
PfamPF002491.2E-171360IPR001005SANT/Myb domain
CDDcd001673.18E-121660No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2364115IPR009057Homeodomain-like
SMARTSM007176.5E-1465113IPR001005SANT/Myb domain
PROSITE profilePS5129419.05665115IPR017930Myb domain
PfamPF002495.2E-1366109IPR001005SANT/Myb domain
CDDcd001675.74E-1069108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGHRCCSKQR VQRGLWSPEE DEKLVKYIAT HGHGSWSSVP KFAGLKRCGK SCRLRWLNYL  60
RPELKRGCFS ALEEQVIIDA HRILGNRWSQ ISKHLPGRTD NEVKNFWNSR IKKKLMAQGL  120
DPKTHNLIPS HQRAANKVAC NISPSNQQPL SIISQDSKMK DVSMEINPPI LTLASPYRSH  180
GSTRLSVIWN VNTQNSYDSS LFPCVSSIEN SRVSPSSSTS VNPTGFGLLD EDCFWSCSNI  240
VEPFEAAKLF EGMRSQDQEN QLNKIFHDNM DASFDTSSYD LELVDSTLFP GSICRDLGSM  300
DDLSWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29131157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G174500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826601e-168AC182660.2 Populus trichocarpa clone Pop1-125N19, complete sequence.
GenBankAC1878611e-168AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466102.10.0myb-related protein 330
TrEMBLB9HYC10.0B9HYC1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-81myb domain protein 67