PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G169400.1
Common NamePOPTR_0010s17650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 333aa    MW: 36413.4 Da    PI: 9.3856
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G169400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.61.1e-3162118358
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                          v YkeC kNhAa +Gg a+DGCgEfmp+++++  +++++kCaACgCHRnFHRre++
  Potri.010G169400.1  62 VVSYKECHKNHAAGIGGLALDGCGEFMPKSTATpQDPTSFKCAACGCHRNFHRREPS 118
                         689**************************9999999******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-2663117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2063118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.6E-2965116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.62665116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.6E-25193265IPR009057Homeodomain-like
SuperFamilySSF466894.49E-15193265IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-25203260IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTKKAMDSTT SPHHITKSPD SDTDTETPLQ THLTKALSLT NGSHKTHQNR HLPPPPQQQN  60
MVVSYKECHK NHAAGIGGLA LDGCGEFMPK STATPQDPTS FKCAACGCHR NFHRREPSGP  120
TTITHMLPPP ALNWTTSSSQ SPGSTSSGPS PSPTSPASPS PQSFYPSAPH MLLSLSSGHS  180
GHLDETQLQK QSYSLAMTSP HGKKRARTKF SQEQREKMYL FAEKLGWRLL RGNNDRGVEE  240
FCSEIGVTRN VFKVWMHNNR SRKEKLNNSY GINSSDKCGF NANEEAGRVG ADNKGCSFNN  300
NGSNYDSFDR YQIESKVRVH GSMAPHGSSP SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-172042611874ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G169400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485560.0EF148556.1 Populus trichocarpa x Populus deltoides clone WS0134_B05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315053.20.0zinc-finger homeodomain protein 11
SwissprotQ9SEZ11e-55ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLB9HY080.0B9HY08_POPTR; ZF-HD family protein
STRINGPOPTR_0010s17650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-45zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]