PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G167500.1
Common NamePOPTR_0010s17470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 453aa    MW: 50310.9 Da    PI: 7.5174
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G167500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16139184147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Potri.010G167500.1 139 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 184
                         899*****************************.***********996 PP
2Myb_DNA-binding53.26.6e-17191234146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r+++T+eE+e+l + ++++G++ W+ Iar ++ gRt++ +k++w+ 
  Potri.010G167500.1 191 RKAFTEEEEERLMQTHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 234
                         789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201134185IPR017930Myb domain
SMARTSM007173.3E-14138187IPR001005SANT/Myb domain
SuperFamilySSF466895.99E-28139232IPR009057Homeodomain-like
PfamPF002497.9E-16139184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-26140192IPR009057Homeodomain-like
CDDcd001674.44E-13142183No hitNo description
PROSITE profilePS5129425.431186240IPR017930Myb domain
SMARTSM007174.1E-13190238IPR001005SANT/Myb domain
PfamPF002497.4E-14191233IPR001005SANT/Myb domain
CDDcd001671.78E-10193233No hitNo description
Gene3DG3DSA:1.10.10.601.6E-20193239IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MARKSVLYAT PYNNSRNVLA CYSSSAPSSS SSSPCSSMGM VYTDIGSLSL SPNFGMTTPA  60
SSSHEMENGR LTWGFPFMAN YHASSDAVAE VKVSDCSDGF GENNETINHN ANSSHEENPN  120
ENMISGRETD SGQSKLCARG HWRPAEDTKL KELVALYGPQ NWNLIAEKLE GRSGKSCRLR  180
WFNQLDPRIN RKAFTEEEEE RLMQTHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKF  240
REQSSAYRRR RLSQSVNRRM EEIPSFVGRD AGMKAEQPPC CPNIPSAGGL NNLSSYRIVN  300
FNGAGCGGVD NGLNGSPHMT IEGEAVSSIK VPQSGFCAQQ TPFDFFFDPK SKDMLGMFSQ  360
TRSWDRPNEE PHISGFYPQH YPPYLMATQQ SNYQNPYCFS DFTASTLPQE VSVSQPSPSS  420
PSVADQSRVS GHFETVAPPF IDFLGKSYQR GA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-331392397107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251YRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G167500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466059.10.0uncharacterized protein LOC7492931
TrEMBLA0A2K1YVD30.0A0A2K1YVD3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s17470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-76myb domain protein 105