PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.010G167300.5

Common Name

POPTR_0010s17450g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 345aa MW: 38234.4 Da PI: 7.2661

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.010G167300.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.7	4.7e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR++gi+KKA+ELS+LCd+++ +++fs+tgk Potri.010G167300.5 10 KLENTNGRQATFAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.983	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.8E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-25	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.12E-26	2	81	No hit	No description
PRINTS	PR00404	1.1E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.0E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCKGA 60 SSIEEVITKF AQLTPQERAK RKLESLEALK KTFKKLDHDV NIPEFLGTSS QTIEDLTSQS 120 RLLQNQLSDV HKRLSYWTNP DKINSIEHLG QLENSLRESL NQIRSCKFQN EMHVPFRMGA 180 EQQLSPLLWI PNNDSQHIML PEEQNLLPHR DAECTASTSF GSYSGYFGAG KNSELSSSGQ 240 ESGMNGILDE LNGTASLRLR LAGQYPYLPG PYNLNLLNDT KFQPAAEMNI QKGPGDFNVS 300 GSFEAPKPEY DSGPHGWAST SGSCAVTMFD DHLYAPVSFP SVLV*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT FAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCKGA  60
SSIEEVITKF AQLTPQERAK RKLESLEALK KTFKKLDHDV NIPEFLGTSS QTIEDLTSQS  120
RLLQNQLSDV HKRLSYWTNP DKINSIEHLG QLENSLRESL NQIRSCKFQN EMHVPFRMGA  180
EQQLSPLLWI PNNDSQHIML PEEQNLLPHR DAECTASTSF GSYSGYFGAG KNSELSSSGQ  240
ESGMNGILDE LNGTASLRLR LAGQYPYLPG PYNLNLLNDT KFQPAAEMNI QKGPGDFNVS  300
GSFEAPKPEY DSGPHGWAST SGSCAVTMFD DHLYAPVSFP SVLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-13	1	91	1	90	MEF2 CHIMERA
6byy_B	1e-13	1	91	1	90	MEF2 CHIMERA
6byy_C	1e-13	1	91	1	90	MEF2 CHIMERA
6byy_D	1e-13	1	91	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.010G167300.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024465773.1	0.0	agamous-like MADS-box protein AGL30 isoform X4
Swissprot	Q1PFA4	1e-113	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A3N7FRM8	0.0	A0A3N7FRM8_POPTR; Uncharacterized protein
STRING	POPTR_0010s17450.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-86	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Potri.010G167300.5
Entrez Gene	7492930

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]