PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G167300.4 | ||||||||
Common Name | POPTR_0010s17450g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 346aa MW: 38321.4 Da PI: 7.2661 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.7 | 4.7e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR++gi+KKA+ELS+LCd+++ +++fs+tgk Potri.010G167300.4 10 KLENTNGRQATFAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.983 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.8E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.63E-27 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 6.15E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-19 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGRVKLKIKK LENTNGRQAT FAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCKGA 60 SSSIEEVITK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIPEFLGTS SQTIEDLTSQ 120 SRLLQNQLSD VHKRLSYWTN PDKINSIEHL GQLENSLRES LNQIRSCKFQ NEMHVPFRMG 180 AEQQLSPLLW IPNNDSQHIM LPEEQNLLPH RDAECTASTS FGSYSGYFGA GKNSELSSSG 240 QESGMNGILD ELNGTASLRL RLAGQYPYLP GPYNLNLLND TKFQPAAEMN IQKGPGDFNV 300 SGSFEAPKPE YDSGPHGWAS TSGSCAVTMF DDHLYAPVSF PSVLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 2e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 2e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 2e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G167300.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024465772.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X3 | ||||
Swissprot | Q1PFA4 | 1e-115 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A3N7FMP7 | 0.0 | A0A3N7FMP7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s17450.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 3e-88 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G167300.4 |
Entrez Gene | 7492930 |
Publications ? help Back to Top | |||
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