PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G166200.1
Common NamePOPTR_0010s17350g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 283aa    MW: 32274.4 Da    PI: 8.0767
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G166200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.32.9e-53101351128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++ d+ky++g r+nrat sgyWkatg+dk+
  Potri.010G166200.1  10 LPPGFRFHPTDEELIMYYLRNQATSRPCPA-SIIPEVDIYKFDPWQLPEKADFGENEWYFFTPLDRKYPNGVRPNRATVSGYWKATGTDKA 99 
                         79****************************.89***************99999************************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s +++ vg+kk Lvfykgr pkg+ktdW+m+eyrl
  Potri.010G166200.1 100 IHS-GSKYVGVKKALVFYKGRPPKGTKTDWIMQEYRL 135
                         ***.99*****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-627159IPR003441NAC domain
PROSITE profilePS5100558.50410159IPR003441NAC domain
PfamPF023655.7E-2611135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQGKTNSEQL PPGFRFHPTD EELIMYYLRN QATSRPCPAS IIPEVDIYKF DPWQLPEKAD  60
FGENEWYFFT PLDRKYPNGV RPNRATVSGY WKATGTDKAI HSGSKYVGVK KALVFYKGRP  120
PKGTKTDWIM QEYRLNDSNK PASKQNGSMR LVLCRIYRKR HAIRHLEEKT ENPVHAHLDV  180
TPDNDAREQQ MMKISGTCSL SRLLEMEYLG SISQLLSGDT YNSDFDSQNL MSDALTDHVI  240
KIQLGEMSPE HTDNGNFQGN QRGSTSLINQ PLVVNPMMYG FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-631016217168NO APICAL MERISTEM PROTEIN
1ut4_B3e-631016217168NO APICAL MERISTEM PROTEIN
1ut7_A3e-631016217168NO APICAL MERISTEM PROTEIN
1ut7_B3e-631016217168NO APICAL MERISTEM PROTEIN
3swm_A3e-631016220171NAC domain-containing protein 19
3swm_B3e-631016220171NAC domain-containing protein 19
3swm_C3e-631016220171NAC domain-containing protein 19
3swm_D3e-631016220171NAC domain-containing protein 19
3swp_A3e-631016220171NAC domain-containing protein 19
3swp_B3e-631016220171NAC domain-containing protein 19
3swp_C3e-631016220171NAC domain-containing protein 19
3swp_D3e-631016220171NAC domain-containing protein 19
4dul_A3e-631016217168NAC domain-containing protein 19
4dul_B3e-631016217168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G166200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827090.0AC182709.2 Populus trichocarpa clone Pop1-85D11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315038.10.0NAC transcription factor 29
SwissprotK4BNG71e-112NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLB9HXY00.0B9HXY0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s17350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-106NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]