PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G163900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 277aa    MW: 30639.8 Da    PI: 4.5494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G163900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-182271255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +grWvAeI+d       +  r++lg+++ta eAa+a+++a+  l+g
  Potri.010G163900.1 22 RYPGVRQRP-SGRWVAEIKDtI-----QeIRVWLGTYDTAGEAARAYDEAACLLRG 71
                        79*******.7*********33.....36**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.28E-252176No hitNo description
PfamPF008479.3E-132271IPR001471AP2/ERF domain
PROSITE profilePS5103218.1622279IPR001471AP2/ERF domain
SMARTSM003803.3E-262285IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-162276IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-242276IPR001471AP2/ERF domain
PRINTSPR003671.5E-72334IPR001471AP2/ERF domain
PRINTSPR003671.5E-74561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAWDRKMEEA ESLHGVRRAR KRYPGVRQRP SGRWVAEIKD TIQEIRVWLG TYDTAGEAAR  60
AYDEAACLLR GANTRTKISG LAPHLLKIIG THGAFEVDDN WSNVDGNGQS GQQEGRGEEE  120
IDMRLFDFQF DDALESSCYH PPFDIAQEMM EPMEQEHNGD EPPNVRRDHE SMNASSRLLF  180
MPIMGSGVPA VATCGYDLPS NLRINSNNNE EEEKRDGKGK YVEEEVQEVV GIPHAPTARS  240
SSSPSSLSKE GINNESNSNS SSAVLEAPGL LTLLDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G163900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466474.11e-155ethylene-responsive transcription factor ERF013
TrEMBLA0A2K1YV420.0A0A2K1YV42_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09080.12e-45(Populus trichocarpa)
STRINGPOPTR_0010s17110.12e-47(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2846122
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11