PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G163000.1
Common NamePOPTR_0010s17040g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 500aa    MW: 54537 Da    PI: 8.6427
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G163000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.75.8e-34223279259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Potri.010G163000.1 223 NDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 279
                         8****************************************.***************8 PP

2WRKY106.31.6e-33393451159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+a dpk+v++tYeg+Hnh+
  Potri.010G163000.1 393 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTAGCKVRKHVERAAADPKAVITTYEGKHNHD 451
                         59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-30210281IPR003657WRKY domain
PROSITE profilePS5081123.732217281IPR003657WRKY domain
SuperFamilySSF1182901.31E-26220281IPR003657WRKY domain
SMARTSM007749.2E-38222280IPR003657WRKY domain
PfamPF031067.3E-26223279IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-37378453IPR003657WRKY domain
SuperFamilySSF1182901.7E-29385453IPR003657WRKY domain
PROSITE profilePS5081138.411388453IPR003657WRKY domain
SMARTSM007743.3E-39393452IPR003657WRKY domain
PfamPF031063.3E-26394451IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MTENGKEHQQ PKQQQPSSPS KSLSSRPTTI TLPPRSFTET FFSSGAPGTL GFSPGPMTLL  60
SSFFSDSDDC KSFSQLLAGA IASPNFKPPD DKSSAGDFSS SSSLSIVPPP PMFSMPLGLS  120
PVSLPDSPGF GLFSPQGFGM THQQALAQVT AQAAQANSIM HVQPEYSTPA MSSTFTSTQG  180
AHQQQQKVRS VADSRVKIQE LSDFSRSDQR SESSSLAVDK PANDGYNWRK YGQKQVKGSE  240
YPRSYYKCTH PNCPVKKKVE RSLDGQVTEI IYKGQHNHQP PQSNKRGKDT GGLNGNSNSH  300
GNSELDSRFQ SGNVSKERDR KDQESSQATP EHISGMSDSE EVGDTEAGGE VDEDEPDPKR  360
RSTEVRVTEP ASSHRTVTEP RIIVQTTSEV DLLDDGYRWR KYGQKVVKGN PYPRSYYKCT  420
TAGCKVRKHV ERAAADPKAV ITTYEGKHNH DVPAAKNSSH NTVNSNASQL KPQTLEKHAS  480
NNSNSQPAAR LRLKEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-42223454878Probable WRKY transcription factor 4
2lex_A2e-42223454878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G163000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315024.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-175WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLB9HXN40.0B9HXN4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s17040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-148WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]