PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G163000.1 | ||||||||
Common Name | POPTR_0010s17040g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 500aa MW: 54537 Da PI: 8.6427 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.7 | 5.8e-34 | 223 | 279 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnh+ Potri.010G163000.1 223 NDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 279 8****************************************.***************8 PP | |||||||
2 | WRKY | 106.3 | 1.6e-33 | 393 | 451 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+a dpk+v++tYeg+Hnh+ Potri.010G163000.1 393 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTAGCKVRKHVERAAADPKAVITTYEGKHNHD 451 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-30 | 210 | 281 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.732 | 217 | 281 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-26 | 220 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-38 | 222 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-26 | 223 | 279 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.8E-37 | 378 | 453 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-29 | 385 | 453 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.411 | 388 | 453 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-39 | 393 | 452 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-26 | 394 | 451 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MTENGKEHQQ PKQQQPSSPS KSLSSRPTTI TLPPRSFTET FFSSGAPGTL GFSPGPMTLL 60 SSFFSDSDDC KSFSQLLAGA IASPNFKPPD DKSSAGDFSS SSSLSIVPPP PMFSMPLGLS 120 PVSLPDSPGF GLFSPQGFGM THQQALAQVT AQAAQANSIM HVQPEYSTPA MSSTFTSTQG 180 AHQQQQKVRS VADSRVKIQE LSDFSRSDQR SESSSLAVDK PANDGYNWRK YGQKQVKGSE 240 YPRSYYKCTH PNCPVKKKVE RSLDGQVTEI IYKGQHNHQP PQSNKRGKDT GGLNGNSNSH 300 GNSELDSRFQ SGNVSKERDR KDQESSQATP EHISGMSDSE EVGDTEAGGE VDEDEPDPKR 360 RSTEVRVTEP ASSHRTVTEP RIIVQTTSEV DLLDDGYRWR KYGQKVVKGN PYPRSYYKCT 420 TAGCKVRKHV ERAAADPKAV ITTYEGKHNH DVPAAKNSSH NTVNSNASQL KPQTLEKHAS 480 NNSNSQPAAR LRLKEEQIT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-42 | 223 | 454 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-42 | 223 | 454 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G163000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315024.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-175 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | B9HXN4 | 0.0 | B9HXN4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s17040.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-148 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G163000.1 |
Entrez Gene | 7481552 |
Publications ? help Back to Top | |||
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