PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G154100.2
Common NamePOPTR_0010s16380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26846.5 Da    PI: 8.9685
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G154100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.11.5e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Potri.010G154100.2  9 KRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIVFSHKGKLFEYST 59
                        79***********************************************96 PP
2K-box79.96e-2778170496
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         ++ ++++   + +++ e+++Lk+++e Lqr++R++lGedL+s+slkeLq+Leqq++++lk+iR++K++ +  q + l k+ ke +++ kaL
  Potri.010G154100.2  78 RQLVATDLDSQGNWTLEYNRLKAKVELLQRNHRNYLGEDLDSMSLKELQNLEQQIDTALKHIRARKEKAIQVQNNMLVKQIKEKEKNDKAL 168
                         5555555666789************************************************************999999999999888888 PP

               K-box  95 rk 96 
                          +
  Potri.010G154100.2 169 AQ 170
                         65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.127161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-34291IPR002100Transcription factor, MADS-box
CDDcd002651.43E-41279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.8E-2186169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.65888182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIVFSH KGKLFEYSTD  60
DSMEKILERY ERYSYAERQL VATDLDSQGN WTLEYNRLKA KVELLQRNHR NYLGEDLDSM  120
SLKELQNLEQ QIDTALKHIR ARKEKAIQVQ NNMLVKQIKE KEKNDKALAQ PAFWDLQDHG  180
PNASSFLLSQ PAGLPLPCLN IGGSHQEEAP EARRNELGHT LEPIYSFHLG GYGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22185184MEF2 CHIMERA
6byy_B1e-22185184MEF2 CHIMERA
6byy_C1e-22185184MEF2 CHIMERA
6byy_D1e-22185184MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120040.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G154100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6159660.0AY615966.1 Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box PTAP1-2 mRNA, complete cds.
GenBankKC8663550.0KC866355.1 Populus simonii x Populus nigra APETALA1-like MADS-box AP1-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316076.11e-171truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ6E6S71e-120AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ6IWY21e-169Q6IWY2_POPTR; APETALA1-like MADS-box PTAP1-2
STRINGcassava4.1_029935m1e-130(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-103MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]