PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G147700.1
Common NamePOPTR_0010s15750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 375aa    MW: 41381.8 Da    PI: 6.636
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G147700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.2e-33222280159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYGqK vk+s++prsYYrCtsagC vkk+vers++d ++v++tYeg+H h+
  Potri.010G147700.1 222 LDDGFRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDSSIVVTTYEGQHIHP 280
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-34207282IPR003657WRKY domain
SuperFamilySSF1182906.02E-29214282IPR003657WRKY domain
PROSITE profilePS5081132.592217282IPR003657WRKY domain
SMARTSM007745.7E-40222281IPR003657WRKY domain
PfamPF031061.6E-26223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNEMKENNNI SSVCTNSMEK REEKKELTRS TTLKTENFNM ANTSFITPPP PPPATTTSDI  60
DQMPSVFALS TTATPPPPLN SIFDMMPFDI IGGDQKAGSL GFTDLLDINQ DFGAAASLFD  120
WFAQNPIVGS QQQQTFVPSP ASTLPETSEV LNNPATPNSS ASISSSSNEA GNDAFQQVKT  180
GDQEEEQDHD KTKKQLKPKK KNQKRQREPR FAFMTKSEVD HLDDGFRWRK YGQKAVKNSP  240
YPRSYYRCTS AGCGVKKRVE RSSDDSSIVV TTYEGQHIHP SPLTPRGSIG ILSDSTGFGA  300
ATSSFVIPQT QYQQHAYLYS SSPSLNINTT SNTSFSPTFS FHQRRSDSPA SLLRDHGLLQ  360
DIVPSQMRKE PKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-262152821077Probable WRKY transcription factor 4
2lex_A2e-262152821077Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.144990.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G147700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774510.0GQ377451.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314962.20.0probable WRKY transcription factor 48
SwissprotQ9FGZ42e-57WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLB9HX420.0B9HX42_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.15e-55WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]