PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G141700.1
Common NamePOPTR_0010s15160g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 916aa    MW: 102868 Da    PI: 8.2187
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G141700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.51.8e-51301463118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++n+
  Potri.010G141700.1  30 EEsRTRWLRPNEIHAMLCNYKLFTINVKPVNFPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNQ 120
                         4459*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         tf rrcywlL+++le+ivlvhy+e++
  Potri.010G141700.1 121 TFVRRCYWLLDKSLEHIVLVHYRETQ 146
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.43425151IPR005559CG-1 DNA-binding domain
SMARTSM010765.6E-7228146IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4532144IPR005559CG-1 DNA-binding domain
PfamPF018333.2E-4373459IPR002909IPT domain
SuperFamilySSF812963.5E-11374460IPR014756Immunoglobulin E-set
CDDcd002046.53E-15558668No hitNo description
Gene3DG3DSA:1.25.40.201.4E-15558671IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-6558638IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.1E-16560671IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.247576641IPR020683Ankyrin repeat-containing domain
SMARTSM002484.0E-6609638IPR002110Ankyrin repeat
PROSITE profilePS5008811.701609641IPR002110Ankyrin repeat
SuperFamilySSF525405.04E-6720823IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001551772794IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.053773802IPR000048IQ motif, EF-hand binding site
SMARTSM000157.6E-4795817IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578796820IPR000048IQ motif, EF-hand binding site
PfamPF006125.1E-4799817IPR000048IQ motif, EF-hand binding site
SMARTSM0001563875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.181877905IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MESGFPDRLI GSEIHGFNFL RDLDVPNIME ESRTRWLRPN EIHAMLCNYK LFTINVKPVN  60
FPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNQ  120
TFVRRCYWLL DKSLEHIVLV HYRETQEGSP ATPVNSHSSS VSDQSAPRLL SEEFDSGAAR  180
AYDSKLTGSS DSLTVRSHAM RLHELNTLEW DELVTNDPGN LIPPGGDKIP CFDRQNQIAV  240
NGSVNDGGIL SGYHLSAEMS TLGNLTKSIV RSGNTQFNSP DSVYSQLTSA QVNSDAQRKG  300
SIVPGTSDSL NNLFNDGLQS QDSFGRWMSS IIDHSPCSVD DAVLESSISS GHDSFASPGI  360
DQHQSSVQEQ TFIITDFSPA WAFSNETTKI LVTGYFHEQY QHLAKSNLFC ICGDTFARAE  420
IVQVGVYSFM LPPHSPGLVN LCLSLDGLEP TSQILNFEYR APSVHDPVVS SEDKSKWEEF  480
HLQMRLAYLL FSTSKTLDVI SNKLSPTNLK EAKKFALKTS NISNSWAYLI KAIEDGGISV  540
AQAKDGFFEL SLKNTIREWL LERVLEGCKT TGYDAQGLGV IHLCAIIGYT WAVYLFSWSG  600
LSLDFRDKHG WTALHWAAYY GREKMVGALL SAGAKPNLVT DPTKENPGGC TAADLASAKG  660
YDGLAAYLSE KALVAQFESM IIAGNVTGSL PTTATNTVNS ENLSEEELYL KDTLAAYRTA  720
ADAAARIQVA FREHSLMVRT KAVQSSSPED EARNIIAAMK IQHAFRNYDS KKKMAAAARI  780
QHRFRTWKIR RDFLNMRHKT IKIQAVFRGF QVRRQYRKII WSVGVVEKAI LRWRLKRRGF  840
RGLRVEPVEA VVDQRHDSDT EEDFYKISQK QAEERVERSV IRVQAMFRSK KAQEEYWRMK  900
LTHNQAKVGD LPGSC*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G141700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2081390.0AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466232.10.0calmodulin-binding transcription activator 5 isoform X1
RefseqXP_024466233.10.0calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLB9HWX40.0B9HWX4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]