PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G141000.1
Common NamePOPTR_0010s15090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 365aa    MW: 40659.6 Da    PI: 8.4446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G141000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.2e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +grWT+eEde l +++   G g+Wk+ ++  g+ R++k+c++rw +yl
  Potri.010G141000.1 14 KGRWTAEEDEVLTKYILANGEGSWKSLPKNAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding53.17.5e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T+eE+e +v++++ lG++ W+ Ia+ ++ gRt++++k++w+++l
  Potri.010G141000.1  67 RGNITKEEEETIVKLHTALGNR-WSFIAAQLP-GRTDNEIKNYWNSHL 112
                         7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.984961IPR017930Myb domain
SuperFamilySSF466894.59E-2711108IPR009057Homeodomain-like
SMARTSM007172.7E-101363IPR001005SANT/Myb domain
PfamPF002499.5E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-201568IPR009057Homeodomain-like
CDDcd001673.47E-71661No hitNo description
PROSITE profilePS5129425.17862116IPR017930Myb domain
SMARTSM007173.7E-1566114IPR001005SANT/Myb domain
PfamPF002495.6E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2569116IPR009057Homeodomain-like
CDDcd001671.23E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEVLTKYIL ANGEGSWKSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TKEEEETIVK LHTALGNRWS FIAAQLPGRT DNEIKNYWNS HLSRKIYSFN  120
RYKNDDSLPS IMDITDVAAG PYKGRGGRTS RSSMKKHKAT LISLGKPKSP KAIAHEVTEP  180
ASKETAAISP KGTNSSLKSS ATEGPQKEPE NRKNLGVQVQ ESCIDIAKRI NAAGISHCPI  240
NDEKETETLG PYEWLDSEIK RLEYALQRQV ADPFGNNTVV TLETDNEAPS MSKESENYNG  300
VMGPKRVAVH YLKKQSNSSN GCSSNEESNG EWYNSFSPMN PRFDEEWLDW DWTIAGDLGG  360
WGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G141000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316017.20.0transcription factor MYB111
TrEMBLB9HWW80.0B9HWW8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-80myb domain protein 111