PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.010G137600.1

Common Name

POPTR_0010s14740g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 323aa MW: 35594.5 Da PI: 5.1268

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.010G137600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8.1e-16	51	100	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E++RR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Potri.010G137600.1 51 RSKHSVTEQKRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 100 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.66E-18	47	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-21	47	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.91	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-13	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-14	51	104	No hit	No description
SMART	SM00353	7.1E-12	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MRGKGNQNQE EEEYEEDEFG SRKDGPSSNF TIDNTNSCKD GKHSDKANAI RSKHSVTEQK 60 RRSKINERFQ ILRDLIPHSD QKRDTASFLL EVIEYVQYLQ EKVQKYEGPY PGWSPEPAKL 120 MPWRNSHWRL QSFVGHPQAT KNGSGLGAAF PGKLDENNIT LTPAMLPSTP NLIESDHVTC 180 KVLEHQPELA NALPMPAPAR SDGLVAPPLE QPVSDAQSAE CPITSEMLNQ QELAIEAGTI 240 SISSVYSQEL LNTLTQALQS ASVDLSQANI SVQIDLGKRA NKGLASGTST SKDPQDCNQV 300 MTHLRDTSEG EDSDQAQKRL KT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.9776	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.010G137600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002314914.2	0.0	transcription factor BIM2
Refseq	XP_024465346.1	0.0	transcription factor BIM2
Swissprot	Q9CAA4	1e-115	BIM2_ARATH; Transcription factor BIM2
TrEMBL	B9HWU2	0.0	B9HWU2_POPTR; Uncharacterized protein
STRING	POPTR_0010s14740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82
Representative plant	OGRP1360	17	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-112	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Potri.010G137600.1
Entrez Gene	7482242

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]