PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.010G136100.1

Common Name

POPTR_0010s14600g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 563aa MW: 60018.1 Da PI: 5.7134

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.010G136100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	378	426	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Potri.010G136100.1 378 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 426 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.29E-11	373	430	No hit	No description
SuperFamily	SSF47459	7.46E-17	373	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	375	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-16	376	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-6	378	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	381	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MDMSDKDKFE LGKSNDNPIN YHSPGGLSSD WRFNSTSIPN SSLGLVPIDN QMSVCRGDLV 60 GAASCSSASV IDSFGPAMWE HPTNSQNLVF CDINVQNIAS SSNTVGIGKG APASLRNGID 120 RTLEMGWNPP NSMLKGGIFL PNAPGVLPQS LSQFPADSAF IERAARFSCF NGGDFGDMVN 180 PFGVPESMGL FSRGGGMMQG PGEVFVGSGM KSVSGGQAQK NVMNAGEASK DVSMSVDHMA 240 TEGSPLKNET KRESLARSRD EAKKGVGGSG NDSDEAEFSG GSGQDEPSLL EGNCGELSAK 300 SLGSKKRKRS GEDAELDQAK GTPQSAKGSP ETQQKGDQKP TSTTSKASGK QGKQGSQGSD 360 QPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN 420 YVQSLQRQVE FLSMKLATVN PRLDFNIEGL LAKDILQSRA VPPSSLAFSS EMPMAYPALH 480 QSQPGLIPTA FPGMESHSDI IRRTINSQLT AMTAGFKEPA QLPNVWDDEL HNVVQMTYGT 540 SAPQDSQDVN EPLPPGHLKV EL*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MDMSDKDKFE LGKSNDNPIN YHSPGGLSSD WRFNSTSIPN SSLGLVPIDN QMSVCRGDLV  60
GAASCSSASV IDSFGPAMWE HPTNSQNLVF CDINVQNIAS SSNTVGIGKG APASLRNGID  120
RTLEMGWNPP NSMLKGGIFL PNAPGVLPQS LSQFPADSAF IERAARFSCF NGGDFGDMVN  180
PFGVPESMGL FSRGGGMMQG PGEVFVGSGM KSVSGGQAQK NVMNAGEASK DVSMSVDHMA  240
TEGSPLKNET KRESLARSRD EAKKGVGGSG NDSDEAEFSG GSGQDEPSLL EGNCGELSAK  300
SLGSKKRKRS GEDAELDQAK GTPQSAKGSP ETQQKGDQKP TSTTSKASGK QGKQGSQGSD  360
QPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PRLDFNIEGL LAKDILQSRA VPPSSLAFSS EMPMAYPALH  480
QSQPGLIPTA FPGMESHSDI IRRTINSQLT AMTAGFKEPA QLPNVWDDEL HNVVQMTYGT  540
SAPQDSQDVN EPLPPGHLKV EL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	309	KKRKRS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.15516	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.010G136100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146811	0.0	EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002314910.2	0.0	transcription factor bHLH49
Swissprot	Q9CAA9	1e-140	BH049_ARATH; Transcription factor bHLH49
TrEMBL	B9HWS9	0.0	B9HWS9_POPTR; Uncharacterized protein
STRING	POPTR_0010s14600.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7249	32	48
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-130	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.010G136100.1
Entrez Gene	7482233

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]