PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G130200.1
Common NamePOPTR_0010s14030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 473aa    MW: 53009.2 Da    PI: 9.5026
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G130200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP158.44e-491042612136
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasn 84 
                         +gkkdrhskihT++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aikelt+t        s +     +a++s+ss+s+
  Potri.010G130200.1 104 TGKKDRHSKIHTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKAAIKELTDTvpkvrkcsS-T-----SAGKSVSSTSE 188
                         79**************************************************************655544421.1.....33333333332 PP

                 TCP  85 sssg.......................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                            +                       ++  s++k+k+s+k ++ + n+ + esr+kararar+rtrekm++k  +
  Potri.010G130200.1 189 ---SevvsgikltpdtngdrrvmeaksDSLVSKPKEKRSKKVHKPVFNPVDrESREKARARARDRTREKMKNKGIN 261
                         ...1223555566667777888888775555555555555555555666666********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.8E-48104257IPR005333Transcription factor, TCP
PROSITE profilePS5136938.019106164IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.188237254IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MIASTLADPE NPSSIEDYSP TSFLQHFPDL FLDDGDLLVG ELLSQQQQQQ QQPGVFGSNT  60
HVLAVETQEI NPVASNDEST RKFNNSKMKG NVNTSKQPIR QRRTGKKDRH SKIHTAQGPR  120
DRRMRLSLQI ARKFFDLQDM LGFDKASKTI EWLFTKSKAA IKELTDTVPK VRKCSSTSAG  180
KSVSSTSESE VVSGIKLTPD TNGDRRVMEA KSDSLVSKPK EKRSKKVHKP VFNPVDRESR  240
EKARARARDR TREKMKNKGI NKSSQSSQAN PDNLEKFGYS STLEYGENLA SGRQEINSSV  300
KVVDEEEESN NHHHLLPHQM DHVSIIDKFF GITNSPRSSS IFDFSESIEV PSGATLKDEF  360
SGFPLKWDVT NGRVQYKYNA LPNMKLPSGN VQAQNPNVNF MTTPHALEPN LSTMIMTTLN  420
AHVEESPNSA FMNMPNPNEQ NPISILKTTT TIDNGNQFSS SHIFARDYDR LY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G130200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1291920.0GU129192.1 Populus balsamifera TCP transcription factor (TB2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314886.20.0transcription factor TCP12
TrEMBLA0A2K1YTC70.0A0A2K1YTC7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s14030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-32TCP domain protein 12