PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G129700.2 | ||||||||
Common Name | POPTR_0010s13980g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 423aa MW: 47448.9 Da PI: 4.7251 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.8 | 5.6e-33 | 57 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+P+d+e++++ L+k v++ + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ Potri.010G129700.2 57 LPRGVKFDPSDQEIIWHLLAK-VSDGGikphpfI--KEFIPTVDnddgICYTHPQNLP-GVKQDGSISHFFHRAIKAYNTGTRKRRKIQgd 143 799************666655.555553664322..345766655667**********.677777888******************86655 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g ++g+kk++v+y + r k+ekt+Wvmh+y+l Potri.010G129700.2 144 nfgDVRWHKTGRTKPVIL-DGIQKGCKKIMVLYmsTVRGGKAEKTNWVMHQYHL 196 555888************.99************6556888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-39 | 42 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.119 | 57 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-14 | 58 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MAGPWLVDGN RFATKIKSAS GASNLERVEW KSDPCKTCPN CHHVIDNSDV VQEWPGLPRG 60 VKFDPSDQEI IWHLLAKVSD GGIKPHPFIK EFIPTVDNDD GICYTHPQNL PGVKQDGSIS 120 HFFHRAIKAY NTGTRKRRKI QGDNFGDVRW HKTGRTKPVI LDGIQKGCKK IMVLYMSTVR 180 GGKAEKTNWV MHQYHLGTSE DERDGEYVVS KIFYQQQANK GEKPEEDLSE IVDDVVAKVD 240 PVTPKSVTPD PPRAERRCQD FEMGQESTNI CTDPCAQQPG IECLEEEVNL LQKNLSYVDQ 300 LETENNVNHM VGDNDNCAGE ERKWWDSESQ QLLDSQQLVE GLSLCAEFLQ SQSPDRGGHG 360 TEANGKTGLS DYALLGPEYL KKDLEECQNL ELDQANIELD TPPEFRLSQL EFGSQDSFTA 420 WG* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G129700.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315960.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-173 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | B9HWM0 | 0.0 | B9HWM0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s13980.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-168 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G129700.2 |
Entrez Gene | 7489370 |