PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G125100.1 | ||||||||
Common Name | POPTR_0010s13490g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CO-like | ||||||||
Protein Properties | Length: 448aa MW: 49059.7 Da PI: 4.9116 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.6 | 1.4e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v Potri.010G125100.1 16 ARACDSCIKKRASWYCAADDAFLCQACDSSVHSAnllarrHERV 59 578*****************************667888888876 PP | |||||||
2 | CCT | 67.9 | 2.7e-23 | 399 | 442 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Potri.010G125100.1 399 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 442 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.2E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.708 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.0E-8 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.59E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 399 | 441 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.1E-18 | 399 | 441 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MICNKSLANA VGGRTARACD SCIKKRASWY CAADDAFLCQ ACDSSVHSAN LLARRHERVR 60 LKSASLKSSD AGSKDNSMPS WHGGFTRKAR TPRHGKPVSR SKIEETTRNI PIPLVPEVGS 120 DEISLEDNEE EHLLYRVPIF DPFAAELCTS TTVSNEAGAV VPAGGTDTDQ RAADSSGTES 180 KVLLGGSEGK DVESLHGFLP SDMDLAEFAA DMESLLGRGL ENESFGMEEL GLMDCKEENE 240 LGVKGYPLGN GKVKVEEEED AGMEEKAVRE CHADIEIDIA KDPPFELSFD YDSPATCVEE 300 DEKVGIEEGD LKNSDGEYED DGGAKKKRRT LLSLDYEAVM TAWASQGSPW TNGYRPDFDA 360 DECWPDADCM GICGAQLHHP YGDVSGLGAH PAALVDGGRE ARVSRYREKR RTRLFSKKIR 420 YEVRKLNAEK RPRMKGRFVK RTTFAGK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 328 | KKKRR |
2 | 409 | 425 | RRTRLFSKKIRYEVRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.131 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G125100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC477294 | 0.0 | KC477294.1 Populus tomentosa COL6-2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315940.2 | 0.0 | zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | A0A2K1YT28 | 0.0 | A0A2K1YT28_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s13490.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 | Representative plant | OGRP802 | 16 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-103 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G125100.1 |
Entrez Gene | 7489343 |