PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G123000.1
Common NamePOPTR_0010s13290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 320aa    MW: 36135.5 Da    PI: 6.7699
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G123000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-152471148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd ll +++++   g+W+  a++ g++Rt+k+c++rw++yl
  Potri.010G123000.1 24 RGPWTLEEDTLLTRYIARNREGRWNMLAKCAGLKRTGKSCRLRWLNYL 71
                        89********************************************97 PP
2Myb_DNA-binding53.74.7e-1777120146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++l+++++ +lG++ W++Ia++++ gRt++++k++w++
  Potri.010G123000.1  77 RGNLTPQEQLLILELHSKLGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9891971IPR017930Myb domain
SuperFamilySSF466891.72E-2922118IPR009057Homeodomain-like
SMARTSM007171.4E-122373IPR001005SANT/Myb domain
PfamPF002491.4E-132471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-212578IPR009057Homeodomain-like
CDDcd001671.19E-92671No hitNo description
PROSITE profilePS5129425.01772126IPR017930Myb domain
SMARTSM007172.0E-1576124IPR001005SANT/Myb domain
PfamPF002497.2E-1677120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2479125IPR009057Homeodomain-like
CDDcd001675.45E-1281120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRASMLGVTR RICNSREEEG ELRRGPWTLE EDTLLTRYIA RNREGRWNML AKCAGLKRTG  60
KSCRLRWLNY LKPDVKRGNL TPQEQLLILE LHSKLGNRWS KIAQHLPGRT DNEIKNYWRT  120
KVQKEARQLN IEASSTKFLD AVRSFWMPRL PQKMEQASYS SSSTTLDSQS QADHGVRSPS  180
SNSTVPSSLS TLLCPPESKL AHYSNLGSEN SSPVTSPHVL SANSDTISPQ PEILENPTCS  240
PLHGDTFYNN LILSDTCYEE GSCYDLDGFN QASAGMGTYD NSPLECQMAG GNWVFDSRVD  300
TIWDMDDMWQ FRDLRETGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-25211251104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G123000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315935.10.0transcription factor MYB62
SwissprotQ9C9G71e-93MYB62_ARATH; Transcription factor MYB62
TrEMBLB9HWG30.0B9HWG3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-90myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]