PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G104300.2
Common NamePOPTR_0010s11490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 393aa    MW: 44690.9 Da    PI: 4.4241
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G104300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35121042103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk ye+++de+++++isws++++sfv++d++ef+ ++LpkyFkhsn +SFvRQLn+YgF+k+++++         weF+++ F +g+k+
  Potri.010G104300.2  12 FLKKCYEMVDDESTNSIISWSQTNDSFVIWDMTEFSVHLLPKYFKHSNSSSFVRQLNIYGFRKIDTDQ---------WEFANDGFIRGQKH 93 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i r+k++
  Potri.010G104300.2  94 LLKNICRRKNS 104
                         ********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-368101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-338101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-548101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVKSSESGVA PFLKKCYEMV DDESTNSIIS WSQTNDSFVI WDMTEFSVHL LPKYFKHSNS  60
SSFVRQLNIY GFRKIDTDQW EFANDGFIRG QKHLLKNICR RKNSQGTDNR KSVQQQDNSI  120
EHCENVENVG LWKEVESLKT GRNAVTQELV KLRQHQETAD NKLLLLRDRL QGMEKNQQQM  180
LSFLVMAMQS PGFLAQLLNK KENNWRIAEP GSIVEQGADD AEQLASEGMI VRYQPPVDEM  240
FEPVHAPPIG PENPRESNPS SDGMKDFFVS PDFMELLMDE NLGFENHTSF GLPELADDGS  300
WEQLLLANPF IENIKDTKPG SEESTDPETD TGTTIVGTQL ERSQSFEYLI EMMEKSNDLE  360
NKATDEGPHF EKSQKLEILT EQMGLLASEP NH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-23410412123Heat shock factor protein 1
5d5u_B2e-23410121129Heat shock factor protein 1
5d5v_B2e-23410121129Heat shock factor protein 1
5d5v_D2e-23410121129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.93830.0bud| catkin| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G104300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474130.0EF147413.1 Populus trichocarpa clone WS01230_L11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466831.10.0heat stress transcription factor A-8
TrEMBLA0A2K1YRV80.0A0A2K1YRV8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s11490.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-108heat shock transcription factor A8
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]