PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G101400.1
Common NamePOPTR_0010s11180g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BBR-BPC
Protein Properties Length: 280aa    MW: 31280 Da    PI: 10.1855
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G101400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind332.21.4e-10112791301
           GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverd 78 
                         mddd+ + rn+gyyep+   ke lglqlm  + +rd+k     r+ n  + +  +a+ +r+         m++ +rd++++          
  Potri.010G101400.1   1 MDDDALNMRNWGYYEPS--YKEPLGLQLMPAMVDRDSKHllprRDPNNIMVGATGAYLPREslvsdasmhMNY-MRDSWINR--------- 79 
                         9***9999*******99..999****************99**9999999************999999999999.9*****99......... PP

           GAGA_bind  79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
                         +k+l++l+ + s        + v ++t+ ++s+ +     l+++     ++ + +e++ +++ + ++ +k+++     ++ pk++k kk++
  Potri.010G101400.1  80 EKFLNMLPPNPS--------YVVHPETSGAQSMPM-----LQPPDSSrDERVSRMEEPSVSK-EGSQLKKRQV----GGTAPKTPKPKKPR 152
                         89*****95554........77899********99.....4444444122333334444433.3333333333....35666777777666 PP

           GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
                         k +     + +++++ +r+k  kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrK
  Potri.010G101400.1 153 KPK-----DGNNNTV-QRAKPAKKSVDVVINGIDMDISGIPIPVCSCTGIPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRK 237
                         622.....2222222.5789*********************************************************************** PP

           GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         mSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
  Potri.010G101400.1 238 MSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 279
                         *****************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.0E-1081279IPR010409GAGA-binding transcriptional activator
SMARTSM012264.4E-1871279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDDDALNMRN WGYYEPSYKE PLGLQLMPAM VDRDSKHLLP RRDPNNIMVG ATGAYLPRES  60
LVSDASMHMN YMRDSWINRE KFLNMLPPNP SYVVHPETSG AQSMPMLQPP DSSRDERVSR  120
MEEPSVSKEG SQLKKRQVGG TAPKTPKPKK PRKPKDGNNN TVQRAKPAKK SVDVVINGID  180
MDISGIPIPV CSCTGIPQQC YRWGCGGWQS ACCTTNVSMY PLPMSTKRRG ARIAGRKMSQ  240
GAFKKVLEKL AAEGYNFANP IDLRTHWARH GTNKFVTIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.17610.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G101400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1305610.0EU130561.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467136.10.0protein BASIC PENTACYSTEINE2
SwissprotQ9SKD01e-106BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLB9HVQ70.0B9HVQ7_POPTR; BBR-BPC family protein
STRINGPOPTR_0010s11180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-104basic pentacysteine 2