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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.010G101400.1 |
Common Name | POPTR_0010s11180g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
BBR-BPC |
Protein Properties |
Length: 280aa MW: 31280 Da PI: 10.1855 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.010G101400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 332.2 | 1.4e-101 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverd 78
mddd+ + rn+gyyep+ ke lglqlm + +rd+k r+ n + + +a+ +r+ m++ +rd++++
Potri.010G101400.1 1 MDDDALNMRNWGYYEPS--YKEPLGLQLMPAMVDRDSKHllprRDPNNIMVGATGAYLPREslvsdasmhMNY-MRDSWINR--------- 79
9***9999*******99..999****************99**9999999************999999999999.9*****99......... PP
GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
+k+l++l+ + s + v ++t+ ++s+ + l+++ ++ + +e++ +++ + ++ +k+++ ++ pk++k kk++
Potri.010G101400.1 80 EKFLNMLPPNPS--------YVVHPETSGAQSMPM-----LQPPDSSrDERVSRMEEPSVSK-EGSQLKKRQV----GGTAPKTPKPKKPR 152
89*****95554........77899********99.....4444444122333334444433.3333333333....35666777777666 PP
GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
k + + +++++ +r+k kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrK
Potri.010G101400.1 153 KPK-----DGNNNTV-QRAKPAKKSVDVVINGIDMDISGIPIPVCSCTGIPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRK 237
622.....2222222.5789*********************************************************************** PP
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
mSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
Potri.010G101400.1 238 MSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 279
*****************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0050793 | Biological Process | regulation of developmental process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSYKE PLGLQLMPAM VDRDSKHLLP RRDPNNIMVG ATGAYLPRES 60 LVSDASMHMN YMRDSWINRE KFLNMLPPNP SYVVHPETSG AQSMPMLQPP DSSRDERVSR 120 MEEPSVSKEG SQLKKRQVGG TAPKTPKPKK PRKPKDGNNN TVQRAKPAKK SVDVVINGID 180 MDISGIPIPV CSCTGIPQQC YRWGCGGWQS ACCTTNVSMY PLPMSTKRRG ARIAGRKMSQ 240 GAFKKVLEKL AAEGYNFANP IDLRTHWARH GTNKFVTIR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU130561 | 0.0 | EU130561.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC2) mRNA, complete cds. |