PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G098100.1 | ||||||||
Common Name | POPTR_0010s10840g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 62aa MW: 6859.9 Da PI: 10.22 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.5 | 3.1e-12 | 2 | 37 | 15 | 50 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kR+ ++ KKA+ELS+LC++ v vi ++g + +++ Potri.010G098100.1 2 KRLPTLKKKASELSILCGIPVRVISSWPDGIFDTWP 37 9**********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 1.4E-8 | 1 | 36 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-10 | 2 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
NKRLPTLKKK ASELSILCGI PVRVISSWPD GIFDTWPENR NEVKTLVSEY KQAVVSTSSN 60 K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G098100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1YRL3 | 4e-36 | A0A2K1YRL3_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0010s10840.1 | 2e-35 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17113 | 4 | 8 | Representative plant | OGRP6766 | 2 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02235.1 | 2e-14 | AGAMOUS-like 51 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G098100.1 |
Entrez Gene | 18102533 |