PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G092800.1
Common NamePOPTR_0010s10290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 419aa    MW: 47314.6 Da    PI: 8.7755
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G092800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-1279135155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  ++n  +r k  + g ++ +e Aa+a++ a++k++g
  Potri.010G092800.1  79 SRFRGVSRHRWTGRFEAHLWDkGTWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 135
                         789******************77777786625555.********************98 PP
2AP250.64.8e-16178229155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Potri.010G092800.1 178 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 229
                         89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1479145IPR016177DNA-binding domain
CDDcd000187.53E-1779145No hitNo description
PfamPF008471.8E-879135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1180144IPR001471AP2/ERF domain
SMARTSM003805.7E-1880149IPR001471AP2/ERF domain
PROSITE profilePS5103218.04480143IPR001471AP2/ERF domain
PRINTSPR003673.1E-58192IPR001471AP2/ERF domain
CDDcd000183.99E-23178239No hitNo description
SuperFamilySSF541711.5E-17178239IPR016177DNA-binding domain
PfamPF008471.3E-11178229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18179238IPR001471AP2/ERF domain
PROSITE profilePS5103218.676179237IPR001471AP2/ERF domain
SMARTSM003802.5E-25179243IPR001471AP2/ERF domain
PRINTSPR003673.1E-5219239IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEMTRNTGDQ ISLGRRRLCM IEEERRAGEA GKCIKRRRRD PSTFALSCNI NDQQSDQQQQ  60
QQSLGDRTAA VATTVKRSSR FRGVSRHRWT GRFEAHLWDK GTWNPTQRKK GKQGAYDEEE  120
SAARAYDLAA LKYWGTSTFT NFPASDYEKE IEIMKTVTKE EYLASLRRRS SGFSRGVSKY  180
RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAAHAY DIAAIEYRGI NAVTNFDLST  240
YIRWLKPEAS LPAPQTQESK PASDPLPMAT FSNHLPSEKP TQLSVLQMDP SLMDNLNTPK  300
NEDIFHRKTL PVSFLTRSSS STALSLLFKS SIFKELVEKN LNTTSEEIEE NDSKNPHNGN  360
NNAGEAFYDG LSPIPHTGTS NEDPFLCSEQ GETNTSPPYS GMEQSLWNGA LSMPSRFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G092800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467077.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLB9HV970.0B9HV97_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-79AP2 family protein