PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G072400.1
Common NamePOPTR_0010s08310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 149aa    MW: 16769.6 Da    PI: 6.0511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G072400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.5e-211970256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrdps +g  +r +lg+f+taeeAa+a+++a+ +++g+
  Potri.010G072400.1 19 RYRGVRRRP-WGKFAAEIRDPSRQG--ARLWLGTFDTAEEAARAYDRAAFSMRGH 70
                        6********.**********96543..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-161970IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-241978IPR016177DNA-binding domain
SMARTSM003807.9E-381983IPR001471AP2/ERF domain
PROSITE profilePS5103224.9351977IPR001471AP2/ERF domain
CDDcd000181.36E-291979No hitNo description
Gene3DG3DSA:3.30.730.101.8E-321978IPR001471AP2/ERF domain
PRINTSPR003678.9E-122031IPR001471AP2/ERF domain
PRINTSPR003678.9E-124359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEEPDKGKEK ELKGREEVRY RGVRRRPWGK FAAEIRDPSR QGARLWLGTF DTAEEAARAY  60
DRAAFSMRGH LAILNFPNDY LSQAIGSSPR RPPVSSSSSD VGASESFQRG SSSSAGQGKQ  120
VIEFEYLDDK ILEELLETEE EKKKRQQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-33141319114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G072400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314634.11e-103ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-48ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9HU981e-102B9HU98_POPTR; Uncharacterized protein
STRINGPOPTR_0010s08310.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]