PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.010G046600.1 | ||||||||
Common Name | POPTR_0010s05670g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 418aa MW: 45651 Da PI: 6.844 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a++ ++g Potri.010G046600.1 54 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDYAARVMRG 103 59*******.**********93....35999*******************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-21 | 54 | 111 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.1E-31 | 54 | 117 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-10 | 54 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-29 | 54 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.01 | 54 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-28 | 54 | 110 | No hit | No description |
PRINTS | PR00367 | 2.5E-9 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 418 aa Download sequence Send to blast |
MEEALRRLNG VPSHMPESNS YEPIIADLQK KSAPSTTTNK RSLKEGGGNS GNMRYRGVRR 60 RPWGRYAAEI RDPQSKERRW LGTFDTAEEA ACAYDYAARV MRGIKARTNF VYPETYSATT 120 DSHNLLPPFT FSKSSHHQPS RQYNTVPSSN WSSVGHSHVG DFSAGGSAPQ RSTSGSSANT 180 STLNMLFLRD FVNSSSGSSS QNHSQPLYDH FPCINGSSYS APSTFAGGSL GNPSSNTSST 240 SPYNFSGTLA DSTVTSLPHM EFNQNYTPGV LNSPNSKAEE LEFFPQEPSG SGLLQEIIQG 300 FLPKHSTEKI DFSKSYGESM VAPSAEIISG GQSLDGLRRS TKYFVKNEHQ GAYLDHEGMK 360 SSGQPEGCYR TGVSCHDQVS YDNEMSLNLP VGQDSFLEDI FQYPDLMSAF AARFKNA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-18 | 55 | 110 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-18 | 43 | 117 | 1 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.010G046600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314597.2 | 0.0 | ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | A0A2K1YNX2 | 0.0 | A0A2K1YNX2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s05670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-14 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.010G046600.1 |
Entrez Gene | 7460751 |